PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521929.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 380aa MW: 42174.3 Da PI: 7.7041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	139	162	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + L++H+ H XP_010521929.1 139 FPCTACGEIFEKSQFLEQHLAIkH 162 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	23	No hit	No description
PROSITE profile	PS50157	9.556	139	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	162	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.81E-12	164	377	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.5E-6	305	377	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MAARKLGTTL RYFFSLLFLF VGCFFLSRCD GREKEKVRKD KKKKLKAVSS FPSGGLSSSW 60 SYLKRVFLST ARICKSRNQT HPNVPITTLT SARSSQNSLV TLIQPENTVP DPETLNGLSC 120 PESDVSSDPL FFPLRNDIFP CTACGEIFEK SQFLEQHLAI KHAVSELIDG ESSTNIVKII 180 FKSGWPEKAA KNPEIHRILK IHNSPKILAR FEEYREAAAT RRRWDERCAA DGNELLRFYC 240 STFMCDLGRN GNSALCGQQY CSICGVIKGG FSPKMDGIAT MASSWRAHVA VPEEVEEEFG 300 FMNVKRAMLV CRVVAGRVGC DSVPEEDDDV DKEDRGCDSL VGSGTGSASG TLMRIDDEEL 360 IVFNPRAVLP CFVIVYTVSA

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MAARKLGTTL RYFFSLLFLF VGCFFLSRCD GREKEKVRKD KKKKLKAVSS FPSGGLSSSW  60
SYLKRVFLST ARICKSRNQT HPNVPITTLT SARSSQNSLV TLIQPENTVP DPETLNGLSC  120
PESDVSSDPL FFPLRNDIFP CTACGEIFEK SQFLEQHLAI KHAVSELIDG ESSTNIVKII  180
FKSGWPEKAA KNPEIHRILK IHNSPKILAR FEEYREAAAT RRRWDERCAA DGNELLRFYC  240
STFMCDLGRN GNSALCGQQY CSICGVIKGG FSPKMDGIAT MASSWRAHVA VPEEVEEEFG  300
FMNVKRAMLV CRVVAGRVGC DSVPEEDDDV DKEDRGCDSL VGSGTGSASG TLMRIDDEEL  360
IVFNPRAVLP CFVIVYTVSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521929.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521929.1	0.0	PREDICTED: uncharacterized protein LOC104800723
TrEMBL	A0A1J3E5S1	1e-171	A0A1J3E5S1_NOCCA; Uncharacterized protein
STRING	XP_010521929.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-132	C2H2 family protein