PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010521804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 27634.9 Da PI: 9.7589 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.5e-20 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+ +++++++++l +++ ++V++WFqN++a++++ XP_010521804.1 6 STRWCPTPEQLMILEEMYRSgVRTPNGAQIQQITSHLafygRIEGKNVFYWFQNHKARDRQ 66 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 118.8 | 2.4e-38 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a+tRW+PtpeQ++iLee+y+sG+rtPn ++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk XP_010521804.1 5 ASTRWCPTPEQLMILEEMYRSGVRTPNGAQIQQITSHLAFYGRIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.058 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-4 | 4 | 71 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.7E-18 | 7 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.40E-5 | 7 | 67 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSPAASTRWC PTPEQLMILE EMYRSGVRTP NGAQIQQITS HLAFYGRIEG KNVFYWFQNH 60 KARDRQKLRK KLAKQLQQQQ SQLHQQQQPT SYRPPYYNHE FIRPCDHLSL APTTNSSLAY 120 SSHSFLMCLP HTGIGGKEGE IKAMKEFCCS KCYARRGDGM EHMMIMPKPI TSSSLYGRNL 180 MMMMMDVGST PSYPSSLSLS STSSLLSSPP LPCCSHINPK PPLKTLELFP VSPSKGSNFK 240 EGPKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010521804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521804.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
Swissprot | Q9SIB4 | 1e-59 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A087GQY0 | 8e-60 | A0A087GQY0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010521804.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-51 | WOX family protein |
Publications ? help Back to Top | |||
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