PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521770.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 816aa    MW: 89832.2 Da    PI: 5.3634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-106693127
                    --S---SGGGGTS.--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                    +kt+lC++f+r G  C++G+ C++aHg+
  XP_010521770.1 66 WKTSLCSYFRRHGaSCSHGSACRYAHGE 93
                    8*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.3E-66298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-126299IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-56593IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8826594IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-86693IPR000571Zinc finger, CCCH-type
SuperFamilySSF549289.41E-5171235IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.9E-4175230IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168748.112268816IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.51E-49270296IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-49328467IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-49512624IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.7E-67517624IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138476.1E-9568626IPR025714Methyltransferase domain
CDDcd024408.05E-6570624No hitNo description
Gene3DG3DSA:3.40.50.1505.7E-67695755IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-49703756IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.7E-7708751IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300711743IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.7E-67791816IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.51E-49800816IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MASSSNDDLS LSQTLISEPV SAEQTRLSDP EPVDDAIVGD KRKRSDEEND DKSGAERSDS  60
TLHPLWKTSL CSYFRRHGAS CSHGSACRYA HGEGELRQRP DGTWDPTSER AKKVMRMTED  120
AGKCEEEEEE DTEILITEQV MDDDADDDGN GGNGNCVLDP SLSKCLVHTP IRWHTDDLKK  180
FLRDQGVQFK FAKKKKGMAV SFVTFENAEH LQSGVEILEG KSVGNKKLKI ADCIPRSCDK  240
NIKSAMESGA GDSRSSNDAV KVKSAREAVT PLAHLSYPEQ LEQKRSSIMQ MLKKLTRNAR  300
KACSNGISLP EWVLKSREIG GLPCNLEGVM ESPVINGYRN KCEFSIGYSV QGKLTAGFML  360
GNFREGVTAV EEPLDCPNIS RIACKYASIF QEFLQNSTFP SWNRFKNCGF WRQLTVREGR  420
KPGGFSDVAD VESSIAEVML IVQVCTSGFD DAKIASEFER MAKAFAEGAR ANSPLLPLTA  480
LVIQDHQGIS NVAPADAPLR SLLIPMSDNG SNQDQASNVV TEARIHDYIN NLRFSISPTA  540
FFQVNTIAAE KLYSLAGDWA GLDPDTLLFD ICCGTGTIGL TLAHRVGMVV GIEMNASAVS  600
DAEWNAKING ISNCKFICSK AEDVMGSLLK EYLDVPPEEE PELPTNPDDG NKDDSSDVKE  660
TPNPEHENGK NLPESLGKDQ EELQENEHKS PSAEAEKSSK PQFRNVVAIV DPPRSGLHPI  720
VIKALRTHPR LRRLVYISCN PETLVANAIE LCTPSPDKAE KGNKDNRGWR KMSSAGLARH  780
RAKSMPASEP FRPIKAMAVD LFPHTHHCEM VMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5xj2_A5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5xj2_B5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5xj2_C5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5xj2_D5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5zq0_A6e-2225763169372Uncharacterized RNA methyltransferase SP_1029
5zq1_A6e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5zq8_A5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5zq8_B5e-2225763168371Uncharacterized RNA methyltransferase SP_1029
5zth_A6e-2225763169372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521770.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1J3GXK50.0A0A1J3GXK5_NOCCA; Zinc finger CCCH domain-containing protein 24
STRINGXP_010521770.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]