PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521511.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 267aa    MW: 29370.5 Da    PI: 6.2361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17170204135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010521511.1 170 CLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 204
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.0E-789251IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.295164200IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-17164214IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.5E-15165201IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.8E-15166228No hitNo description
CDDcd002022.41E-14169216No hitNo description
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
PfamPF003202.1E-15170204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEFYVGNYFS GVAEKNVNSG ENFAVEDLLD FSNEDMISSE GMFLDNVNGS STDSSTVTVV  60
DSCNSSFSGS FGADSQFSGE LCVPYDEAAE LEWLSNFVEE SFTGDQLHIL PSGSKPPTPE  120
SSSSSSRLPG KARSKRSRAA PGDWSTRFLP LSSEKPKKRE TGDEGNGRKC LHCATEKTPQ  180
WRTGPMGPKT LCNACGVRYK SGRLVPEYRP AASPTFVSTK HSNSHRKVLE LRRQKEFQGP  240
QFIDHTSLFP AGDDIFLHPY HLAHSHI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521511.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826322e-74GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2P6RXA41e-109A0A2P6RXA4_ROSCH; GATA transcription factor
STRINGXP_010521511.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-66GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]