PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521172.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 322aa    MW: 36337.6 Da    PI: 5.4333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14133184155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P+    ++++ + a+i   A++Y+k+L+
  XP_010521172.1 133 QRMTHIAVERNRRKQMNEYLAVLRSLMPPT---YAQRGDQASIIGGAINYVKELE 184
                     79***************************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.62E-13131188No hitNo description
SuperFamilySSF474591.83E-17132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-12133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEAVVYPQ DPFGYVSCKD FLFHDLYFQE DRDGDTKSNI KLGQEQEQGF ACNHYTNHTA  60
ENDNEDSNLR ATEDRHHPWQ DHVQCPLIPS LEGFGPLSMD NQPPPDIAVV AAGGRRKRRR  120
TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PTYAQRGDQA SIIGGAINYV  180
KELEHLLQSM EPKKKTQNSG DDDDDTSSFS DFFTFPQYTL RPSESSAAAA EGTAEIEVTM  240
AESNANLKIL TKKRPRQLLK LVSAIQSLRL TLLHLNVTTL DHSVLYSISV KVEEGSQLNT  300
VDDIAAAVNQ ILKRVEEESA FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2115120RKRRRT
3133144RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521172.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-140BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC41e-139R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_010521172.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-123bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]