PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521148.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 370aa    MW: 42717 Da    PI: 7.3149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000631841123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    y+C+ Cg s s k++ ++Hi + H
  XP_010521148.1 18 YVCQFCGISRSKKYLITNHILSeH 41
                    9*******************9988 PP
2zf-C2H221.46.8e-076888323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    Cp Cg +F+ + +Lk+H+++H
  XP_010521148.1 68 CPECGACFKKPAHLKQHMQSH 88
                    *******************99 PP
3zf-C2H222.33.5e-0794118123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     +kC+  dC+ sF+rk++L+rHi +H
  XP_010521148.1  94 FKCSvdDCTASFRRKDHLNRHILSH 118
                     89********************999 PP
4zf-C2H213.30.00025123148123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp   C+  Fs +sn krH +  H
  XP_010521148.1 123 FKCPveGCSSEFSVQSNIKRHVKQfH 148
                     89*******************99877 PP
5zf-C2H220.99.6e-07172196123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk F+ +s L++H+ +H
  XP_010521148.1 172 HVCQeiGCGKAFRYPSKLQKHQDSH 196
                     79********************998 PP
6zf-C2H218.94.2e-06262287123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kC+   C+++Fs  snL++H++  H
  XP_010521148.1 262 FKCEfdGCSMTFSKVSNLRTHMKAvH 287
                     89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355141841IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0096693IPR007087Zinc finger, C2H2
SMARTSM003550.00376688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-86892IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.29E-1178120No hitNo description
Gene3DG3DSA:3.30.160.604.0E-993120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84594123IPR007087Zinc finger, C2H2
SMARTSM003554.6E-494118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-7104155No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6121150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.577123153IPR007087Zinc finger, C2H2
SMARTSM003550.023123148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-8164196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-5168198No hitNo description
PROSITE profilePS5015710.824172201IPR007087Zinc finger, C2H2
SMARTSM003550.0055172196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174196IPR007087Zinc finger, C2H2
SMARTSM003551.3204229IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4206227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
SMARTSM0035522232253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-9243284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-10243300No hitNo description
PROSITE profilePS5015712.861262292IPR007087Zinc finger, C2H2
SMARTSM003558.7E-5262287IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4286314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.9293319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAEDGDVETP IIRDIRRYVC QFCGISRSKK YLITNHILSE HQMEMHEKEE IEASEEEEEE  60
DSNGKNICPE CGACFKKPAH LKQHMQSHSD ERLFKCSVDD CTASFRRKDH LNRHILSHKG  120
KLFKCPVEGC SSEFSVQSNI KRHVKQFHEK TDGCNDDGDH AQDESASSQK QHVCQEIGCG  180
KAFRYPSKLQ KHQDSHVKLD SVEAFCSEPG CMKYFTNEEC LKAHVRSCHQ YINCEICGSK  240
HLKRNIKRHL RTHEKDSSTQ EFKCEFDGCS MTFSKVSNLR THMKAVHEDV RPFICGFPGC  300
GMRFAYKHVR NNHEASGSHT YACGDFVEYD EQFRSRARGG VKRKQVTAEM LVRKRVMPPQ  360
FDAEEDEQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-147022419155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-147022419155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521148.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521148.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A087HHM00.0A0A087HHM0_ARAAL; Uncharacterized protein
STRINGXP_010521148.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA