PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520361.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 497aa MW: 54765.6 Da PI: 10.1224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010520361.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.65E-7	67	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.9E-5	68	90	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	84	110	140	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	133	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.65E-7	140	165	No hit	No description
SMART	SM00355	180	145	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MMMPDDHLHL PFPNFVHQQE PINPNPNQNP NPTSAKPSKK RRNLPGTPDP DAEIIALSPK 60 SLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKDQVKKKVY VCPEKSCVHH 120 DPARALGDLT GIKKHYSRKH GEKKWKCEKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF 180 SRKDSFITHR AFCDALAEES AKFASVPPSV PTNINHQHQP PNATPSQLDP TLIGHGLNLN 240 GNTNVLFGQS YYTASAGLHP DQISPPMNIL ALSSSSPRGT FESLHNLWQL QGQSASHQWP 300 LNSNPNSSLQ RGLMPKNQED EIKKGSGGSG SRSLNPMTDP SLSSLFTPTN NNQNVQQQAA 360 YMSATALLQK AAQMGSTRSN SNGTTAAFGL MTSSLFNNTQ PNTNSIKKRT DTTENNQDSM 420 ANMKNKASMP SSSVGEAGGL TRDFLGVGRH EQQQQQHRLH HHLYPSNGAL MLKQNQPGFG 480 PATAGSAAID MGSTLLK

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MMMPDDHLHL PFPNFVHQQE PINPNPNQNP NPTSAKPSKK RRNLPGTPDP DAEIIALSPK  60
SLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKDQVKKKVY VCPEKSCVHH  120
DPARALGDLT GIKKHYSRKH GEKKWKCEKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAEES AKFASVPPSV PTNINHQHQP PNATPSQLDP TLIGHGLNLN  240
GNTNVLFGQS YYTASAGLHP DQISPPMNIL ALSSSSPRGT FESLHNLWQL QGQSASHQWP  300
LNSNPNSSLQ RGLMPKNQED EIKKGSGGSG SRSLNPMTDP SLSSLFTPTN NNQNVQQQAA  360
YMSATALLQK AAQMGSTRSN SNGTTAAFGL MTSSLFNNTQ PNTNSIKKRT DTTENNQDSM  420
ANMKNKASMP SSSVGEAGGL TRDFLGVGRH EQQQQQHRLH HHLYPSNGAL MLKQNQPGFG  480
PATAGSAAID MGSTLLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	141	206	3	68	Zinc finger protein JACKDAW
5b3h_F	6e-35	141	206	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520361.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520360.1	0.0	PREDICTED: protein indeterminate-domain 9
Refseq	XP_010520361.1	0.0	PREDICTED: protein indeterminate-domain 9
Swissprot	Q944L3	1e-150	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A398APW3	1e-168	A0A398APW3_BRACM; Uncharacterized protein
STRING	XP_010520360.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-137	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]