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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 42105.2 Da PI: 5.1683 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2.1e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ XP_010520143.1 90 KSILCEFFKA-GQCQKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.89E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-5 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.953 | 159 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7 | 159 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 8.9E-19 | 219 | 295 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MPPKQQAKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKVD PSKVAVKKKK 60 EEEKAREKEL NELFKVAISQ PKVPPGVDPK SILCEFFKAG QCQKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DKEETMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLE AVEKKQYGWF 180 WACPNGGKDC HYRHALPPGY VLKSQMKALL EEESQKRPVE EEIENERAKL TKSTPMTPEL 240 FMEWKKKKMD ERDAGLAAQQ AERAKNDRMS GRELFLANAS LFVDDAEAYE DYEREKEPEQ 300 SDQKAKSKET EAGPSASAVA GNTSKDVDED EDVDDDDDDL DIDELNELEA SLSKTSIQIH 360 EPTNAGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520143.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520143.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 21 isoform X3 | ||||
Swissprot | Q9SK74 | 0.0 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A2R6R7Z0 | 0.0 | A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | XP_010520141.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-171 | C3H family protein |