PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520048.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 234aa MW: 26460.6 Da PI: 9.0582

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.7	8.3e-31	108	162	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt++LH++Fve+v+qLGG+ kAtPk+ilelm+v+ L++ hvkSHLQkYR+ XP_010520048.1 108 KRRIKWTSDLHDKFVECVNQLGGPTKATPKAILELMEVDELSIFHVKSHLQKYRS 162 689***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.364	105	165	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-27	105	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	106	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	108	162	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	112	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MASRRRTPSA SKRSASDDSD KTKHAKPPSC SRPDRADTST RPRCKCFDIS ELFSADGGAK 60 NSASDDKYAS LSGRHSCHVE TKCSSMEGHG RSMRSSTGSE LTKTSSNKRR IKWTSDLHDK 120 FVECVNQLGG PTKATPKAIL ELMEVDELSI FHVKSHLQKY RSVSVQARDH VQVNIDEGYI 180 HHNDSWIKEL MRLQDGVIEH LQEHLQIQTS LQLMVEEQNK LFQQIIDHSS RSKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	108	162	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	108	162	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	108	162	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	108	162	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	108	162	2	56	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520048.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520048.1	1e-174	PREDICTED: myb family transcription factor PHL5-like isoform X3
TrEMBL	A0A397XQ85	1e-49	A0A397XQ85_BRACM; Uncharacterized protein
STRING	XP_010520046.1	1e-172	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	7e-33	G2-like family protein