PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010520044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 385aa MW: 43864.5 Da PI: 7.0644 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.6 | 5.1e-32 | 197 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ XP_010520044.1 197 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 251 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.24E-17 | 195 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-28 | 196 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-23 | 197 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 201 | 250 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-21 | 284 | 331 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 385 aa Download sequence Send to blast |
MENINFEFSH ASSEGRIQPQ TQPQPLLQTQ FGVQDMNVSQ SHYSQQPSGN WSEPFSGFPP 60 YDCTTAANPS FSVQCSSSKP YVSSFHAYHH HQPPCSEAQG FSLDQSESSN TLQSLVKSSS 120 SHPPSSQFFK PNASPGSYSV SFEANQDHPQ ELCKNYINSS NVTQLNFSSQ NNQYNQSNPR 180 FHRPNPSPSS REVVGSKTRI RWTQDLHEKF VECVNRLGGA EKATPKAILK LMDSEGLTIF 240 HVKSHLQKYR IAKYIPDSQE ESWIYIFAGK YEKKACEKEM HTGVQIKEAL QLQLDVQRHL 300 HEQLEIQRSL QLRIEEQGKQ LKMMLEQQQK TKESLFKAQK NRSSLPDSDD SRPFSEELEA 360 EISTPESFGN TQLRSKDKLR NQENA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-23 | 197 | 254 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010520044.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520044.1 | 0.0 | PREDICTED: myb family transcription factor PHL5-like isoform X1 | ||||
Swissprot | Q0WVU3 | 1e-120 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | D7LZU1 | 1e-127 | D7LZU1_ARALL; Uncharacterized protein | ||||
STRING | XP_010520044.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-100 | G2-like family protein |