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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010520038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 239aa MW: 25462.7 Da PI: 10.0253 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 8.2e-07 | 37 | 60 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_010520038.1 37 KSKPCTKFFSTSGCPFGENCHFLH 60 7789******************** PP | |||||||
2 | zf-CCCH | 35.1 | 2.3e-11 | 205 | 230 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C +fa+ G C +GdrC+FaHg+ XP_010520038.1 205 YKTKMCERFAK-GNCTFGDRCHFAHGE 230 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-5 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-8 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.46E-15 | 102 | 181 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.4E-12 | 111 | 181 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.865 | 112 | 176 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-16 | 112 | 180 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.72E-14 | 114 | 176 | No hit | No description |
Pfam | PF00013 | 1.8E-12 | 114 | 178 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-16 | 199 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-7 | 204 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-9 | 204 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.065 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-8 | 205 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDARKRGRPE AGSYNSNGGF KRSRQEMESY STGLGSKSKP CTKFFSTSGC PFGENCHFLH 60 YVPGGYNAIA HMTNLGPPLP QASRNMPGSG PGRYSGRTEH APPGPVSSFG ASATAKISVD 120 ASLAGAIIGK GGINSKQICR QTGAKLSIQE HERDPNLKNI ELEGTFEQIK EASAMVRELI 180 VRLGAAARKH MGGSSEGKPH PGSSYKTKMC ERFAKGNCTF GDRCHFAHGE AELRKSGVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010520038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520038.1 | 1e-176 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Swissprot | Q9C7C3 | 1e-134 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | E4MYD4 | 1e-139 | E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10 | ||||
TrEMBL | V4M8U6 | 1e-139 | V4M8U6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010520038.1 | 1e-176 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-136 | C3H family protein |
Publications ? help Back to Top | |||
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