PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010519890.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 365aa MW: 41308 Da PI: 8.0406

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.6	4.2e-11	78	114	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 +k +rr+++NReAAr+sR+RKka++++Le+ +L XP_010519890.1 78 TDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 114 5899**************************8655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-5	76	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.852	78	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-8	79	109	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.66E-21	80	132	No hit	No description
SuperFamily	SSF57959	7.74E-7	80	120	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-7	82	108	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-32	167	242	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNTTSTHFVP PRRVGIYEPL HQIGMWGENF KGNGTLNTPC PIIVPPDPKL DNMSEDTSHG 60 TAGTPHRFDQ EASTSRHTDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIQLEQEL 120 DRARQQGFSI GGGVDAASSL SFSGSMNPGI GAFEMEYGHW VEEQNRQICE LRALLHGHAS 180 DIELRMLVDN VMKHYFELFR MKSAAAKADV FYVMSGMWKT SAERFFLWIG GFRPSELLKV 240 LLPHLDVLTE QQLLDVCNLR QSCQQAEDAL SQGMEKLQQT LAESVAAGQL GEGSYVPQMT 300 SAMERLEALV SFVNQADHLR HETLQQMYRI LTTRQAARGL MALGEYFQRL RALSSSWATR 360 QREPA

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNTTSTHFVP PRRVGIYEPL HQIGMWGENF KGNGTLNTPC PIIVPPDPKL DNMSEDTSHG  60
TAGTPHRFDQ EASTSRHTDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIQLEQEL  120
DRARQQGFSI GGGVDAASSL SFSGSMNPGI GAFEMEYGHW VEEQNRQICE LRALLHGHAS  180
DIELRMLVDN VMKHYFELFR MKSAAAKADV FYVMSGMWKT SAERFFLWIG GFRPSELLKV  240
LLPHLDVLTE QQLLDVCNLR QSCQQAEDAL SQGMEKLQQT LAESVAAGQL GEGSYVPQMT  300
SAMERLEALV SFVNQADHLR HETLQQMYRI LTTRQAARGL MALGEYFQRL RALSSSWATR  360
QREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519876.1	0.0	PREDICTED: transcription factor TGA1-like isoform X4
Refseq	XP_010519883.1	0.0	PREDICTED: transcription factor TGA1-like isoform X4
Refseq	XP_010519890.1	0.0	PREDICTED: transcription factor TGA1-like isoform X4
Refseq	XP_010519899.1	0.0	PREDICTED: transcription factor TGA1-like isoform X4
Swissprot	Q39237	0.0	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A384L8H7	0.0	A0A384L8H7_ARATH; TGA1
TrEMBL	B9DGG1	0.0	B9DGG1_ARATH; AT5G65210 protein
STRING	XP_010519853.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]