PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519793.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 265aa    MW: 29831.9 Da    PI: 10.0869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82e-2198148256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_010519793.1  98 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAFKLRGE 148
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.62E-3497155No hitNo description
SMARTSM003803.5E-3898161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3298156IPR001471AP2/ERF domain
PROSITE profilePS5103223.24898155IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2398156IPR016177DNA-binding domain
PRINTSPR003672.1E-1199110IPR001471AP2/ERF domain
PfamPF008471.6E-1599148IPR001471AP2/ERF domain
PRINTSPR003672.1E-11121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEALEPFMNT SSSSSKPVFT PFYTIQTVPA SNHHGLNQTG PIGLNQLTPA QILQIQTEFY  60
LRQNRNLARR KGHNLRPLTA NPFPMKNPAA SVSKPTKLYR GVRQRHWGKW VAEIRLPRNR  120
TRLWLGTFDT AEEAALAYDQ AAFKLRGEYA RVNFPSHTRH GDYKPLPPSV NKKFQAICDG  180
LAPPELKIPA KAEEGLPGFY ETGSVVSKQM KTGPCPNNRF VPESDKKLSD LSNESPWEES  240
TSFGLQKYPS LEIDWDALAK LSEPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2097162470ATERF1
3gcc_A3e-2097162470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519793.10.0PREDICTED: ethylene-responsive transcription factor ERF057
SwissprotQ9FJQ23e-78ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLV4MJ072e-84V4MJ07_EUTSA; Uncharacterized protein
STRINGXP_010519793.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-70ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]