PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 269aa MW: 30384 Da PI: 7.6643

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010519663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.7e-18	31	81	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g XP_010519663.1 31 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 81 699*****.7*****32...35********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.7E-13	31	81	IPR001471	AP2/ERF domain
CDD	cd00018	1.48E-32	31	91	No hit	No description
SuperFamily	SSF54171	1.5E-19	32	90	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.823	32	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-28	32	89	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-37	32	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-8	33	44	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-8	55	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000302	Biological Process	response to reactive oxygen species
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0035865	Biological Process	cellular response to potassium ion
GO:0048528	Biological Process	post-embryonic root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEHQITQKHQ PKNNTTKKKN NASNNNNNGK TKFVGVRQRP SGKWVAEIKD TTQKIRMWLG 60 TFETAEEAAR AYDEAACLLR GSNTRTNFAT QFPTNPHLSL KIRNLLHQKK NMKQQQEQQQ 120 KRITTTVAAA TIPASSNAVI QPADMLDNVY RPDLAGCIAG QPEEHEGFHL SYPWQLLAGF 180 DHQVPSARAA SETNLGHHHQ FQDPDTTDQQ PNLGFAELQR MKDMERQVSA SLYTMSGTNY 240 DCMTTEYAIF DPTDPIWDLP ALSQLFCPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-14	32	92	14	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00521	DAP	Transfer from AT5G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010519663.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519663.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-11
Swissprot	Q6J9S1	4e-91	RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBL	M4CQM9	7e-88	M4CQM9_BRARP; Uncharacterized protein
STRING	XP_010519663.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7526	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	2e-71	related to AP2 11

Publications ? help Back to Top
Meng S, et al. Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level. Mol Plant, 2016. 9(3): p. 461-470 [PMID:26732494]