PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519225.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 428aa    MW: 46569.6 Da    PI: 7.5763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-08103124426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+f+ + G C+yGd+C++ H+
  XP_010519225.1 103 KVCNFWVQ-GNCSYGDKCRYLHC 124
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0612045IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9442046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06599126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6100123IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5101125IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5102124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5103123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.8E-13125232IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.0E-4130169IPR001680WD40 repeat
SuperFamilySSF509786.23E-46131421IPR017986WD40-repeat-containing domain
PfamPF004000.034134169IPR001680WD40 repeat
PROSITE profilePS5008212.547137178IPR001680WD40 repeat
PROSITE profilePS5029420.145137340IPR017986WD40-repeat-containing domain
PRINTSPR003203.5E-6156170IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780156170IPR019775WD40 repeat, conserved site
SMARTSM003204209246IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.8E-33233421IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.6E-4253291IPR001680WD40 repeat
PfamPF004000.01258291IPR001680WD40 repeat
PROSITE profilePS5008212.614260300IPR001680WD40 repeat
PRINTSPR003203.5E-6278292IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9E-4294331IPR001680WD40 repeat
PfamPF004000.0042296330IPR001680WD40 repeat
PRINTSPR003203.5E-6318332IPR020472G-protein beta WD-40 repeat
SMARTSM003206.4335378IPR001680WD40 repeat
SMARTSM003204.9381418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNGGNKRVYH RLGGPTGPSD PKQKVCFHWR AGRCNRFPCP FLHRELPPPG HVTTSTTTAT  60
SNKRVADESG FAGPSHRRGP GFNGNGNSWG RFGGSRAVTK TEKVCNFWVQ GNCSYGDKCR  120
YLHCWSMGDS FSFLTQLDGH QKLVSAIDLP SGSGKLYTAS QDETLRIWDC ASGQCTGVFN  180
LGGEVGCMIS EGPWLLVGMP NLVKAWNIQD NADQSLTGPV GQVYSLVVGN DLLFAGTQDG  240
SILAWRYNAT TSCFDPAASL KGHTRAVVSL YVGTNSRLYS GSMDNSIKVW SLDNLQCIQT  300
LTEHTSVVMS LICWDQFLLS CSLDNTIKVW VATEGGNLEV TYTHQEEHGV LALCGMHDAE  360
AKPVLLCSCN DNSLRLYDLP SFAERGKIFA KEEIRSIQIG PGGLFFTGDG TGQVKVWKWN  420
TVPTAASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-171274214323Tako8
6g6n_A5e-171274214323Tako8
6g6n_B5e-171274214323Tako8
6g6n_C5e-171274214323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519221.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1
RefseqXP_010519222.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2
RefseqXP_010519223.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2
RefseqXP_010519224.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2
RefseqXP_010519225.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X3
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010519221.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1