PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46569.6 Da PI: 7.5763 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.9e-08 | 103 | 124 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f+ + G C+yGd+C++ H+ XP_010519224.1 103 KVCNFWVQ-GNCSYGDKCRYLHC 124 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.061 | 20 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.944 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 100 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 102 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 103 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 5.8E-13 | 125 | 232 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.0E-4 | 130 | 169 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 6.23E-46 | 131 | 421 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 0.034 | 134 | 169 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.547 | 137 | 178 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 20.145 | 137 | 340 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 3.5E-6 | 156 | 170 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 156 | 170 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 4 | 209 | 246 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 1.8E-33 | 233 | 421 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 4.6E-4 | 253 | 291 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.01 | 258 | 291 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.614 | 260 | 300 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.5E-6 | 278 | 292 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.9E-4 | 294 | 331 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0042 | 296 | 330 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.5E-6 | 318 | 332 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 6.4 | 335 | 378 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.9 | 381 | 418 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MNGGNKRVYH RLGGPTGPSD PKQKVCFHWR AGRCNRFPCP FLHRELPPPG HVTTSTTTAT 60 SNKRVADESG FAGPSHRRGP GFNGNGNSWG RFGGSRAVTK TEKVCNFWVQ GNCSYGDKCR 120 YLHCWSMGDS FSFLTQLDGH QKLVSAIDLP SGSGKLYTAS QDETLRIWDC ASGQCTGVFN 180 LGGEVGCMIS EGPWLLVGMP NLVKAWNIQD NADQSLTGPV GQVYSLVVGN DLLFAGTQDG 240 SILAWRYNAT TSCFDPAASL KGHTRAVVSL YVGTNSRLYS GSMDNSIKVW SLDNLQCIQT 300 LTEHTSVVMS LICWDQFLLS CSLDNTIKVW VATEGGNLEV TYTHQEEHGV LALCGMHDAE 360 AKPVLLCSCN DNSLRLYDLP SFAERGKIFA KEEIRSIQIG PGGLFFTGDG TGQVKVWKWN 420 TVPTAASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 5e-17 | 127 | 421 | 4 | 323 | Tako8 |
6g6n_A | 5e-17 | 127 | 421 | 4 | 323 | Tako8 |
6g6n_B | 5e-17 | 127 | 421 | 4 | 323 | Tako8 |
6g6n_C | 5e-17 | 127 | 421 | 4 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519221.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_010519222.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 | ||||
Refseq | XP_010519223.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 | ||||
Refseq | XP_010519224.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 | ||||
Refseq | XP_010519225.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X3 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | R0GZR9 | 0.0 | R0GZR9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010519221.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |