PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519070.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92361 Da    PI: 6.2425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010519070.1 19 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    6789*****************************************************97 PP
2START173.11.8e-541683762205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++tl vi +g  g+++l 
  XP_010519070.1 168 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPM-KVAEILKDRPSWFRDCRCVDTLSVIPTGngGTIELV 261
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l +g++v++++S++s +  p+    ss+vRae+  Sg+li+p+++g+s +++v+hvd+++++++++lr+l+
  XP_010519070.1 262 YMQTYAPTTLAAaRDFWTLRYTTSLDDGSFVVCERSLTSVTGGPTgphPSSFVRAEMMSSGFLIRPCEGGGSILHIVDHVDMDAWSVPEVLRPLY 356
                     ********************************************9998899******************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+ + ++k++va+l++ ++
  XP_010519070.1 357 ESSKILAQKMTVAALRHVRQ 376
                     ***************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18777IPR009057Homeodomain-like
PROSITE profilePS5007115.6771478IPR001356Homeobox domain
SMARTSM003891.1E-151682IPR001356Homeobox domain
PfamPF000463.1E-161977IPR001356Homeobox domain
CDDcd000861.14E-161979No hitNo description
SuperFamilySSF466899.41E-171982IPR009057Homeodomain-like
CDDcd146861.18E-671110No hitNo description
PROSITE profilePS5084825.314158386IPR002913START domain
CDDcd088752.26E-71162378No hitNo description
SMARTSM002347.2E-53167377IPR002913START domain
SuperFamilySSF559615.36E-36167379No hitNo description
Gene3DG3DSA:3.30.530.201.5E-20167372IPR023393START-like domain
PfamPF018527.5E-52168376IPR002913START domain
PfamPF086702.1E-49700844IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MMAHAMNRES PDKGMDSSKY VRYTPEQVEA LERVYAECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE AARLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMK  120
NQIHTGSGTT TDNSCESVVV SGQQHQQQNP TPQHPQRDAN NPAGLLSIAE ETLAEFLSKA  180
TGTAVDWVQM IGMKPGPDSI GIVAVSRNCS GIAARACGLV SLEPMKVAEI LKDRPSWFRD  240
CRCVDTLSVI PTGNGGTIEL VYMQTYAPTT LAAARDFWTL RYTTSLDDGS FVVCERSLTS  300
VTGGPTGPHP SSFVRAEMMS SGFLIRPCEG GGSILHIVDH VDMDAWSVPE VLRPLYESSK  360
ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QRLSRGFNDA VNGFADDGWS  420
PMGSDGAEDV TIMINSSPGK YVSSQFGSAF LPSFSGGVLC AKASMLLQNV PPAVLVRFVR  480
EHRSEWADYG VDAYSSACLR TNPFAVPCAR AGGFPSSQVI LPLAQTIEHE EFLEVVRLEG  540
HAFSPEDMGL ARDMYLLQLC SGVEETAVGG CAQLVFAPID ESFADDAPLL PSGFRVIPLE  600
HKTIPNGSSA SRTLDLASAL EGPSRATGEA DPNGYNHRSV LTIAFQFTFD SHSRDNVAAM  660
ARPYVRGIVG SIQRVALAIA PRLGSSLGPL PLPTSPEALT LVRWISRSYR IHTGADLFCT  720
DSQSGDVLLK QLWGHSDSIL CCSLKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKTLD  780
ESGRKALCSE FAKIMQQGYA HLPAGICSSS MGRPVSYDQA TVWKVVDDDE SNHCLAFMFV  840
NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519070.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLV4M7290.0V4M729_EUTSA; Uncharacterized protein
STRINGXP_010519070.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]