PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010518852.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 291aa MW: 32441.6 Da PI: 9.7638

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010518852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.6	3.2e-29	25	75	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ XP_010518852.1 25 KPRLRWTADLHDRFVDAVTRLGGADKATPKSVLKLMGLKGLTLYHLKSHLQ 75 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-27	22	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.24	22	82	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.1E-21	25	77	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.4E-13	25	77	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-7	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-18	133	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MERMNLGGGG IGYENGGVVM TRDPKPRLRW TADLHDRFVD AVTRLGGADK ATPKSVLKLM 60 GLKGLTLYHL KSHLQVLLLP THVLGQQQAK KQNRAEHDTE KGGSSYVQFD RHSQGAFSNS 120 SRIDGLQRNI PFGESLRHQV EVRQRLQEQL EVQKKLQRRI EAQGKYLLAL LDKAQKSLPT 180 YTNIPSDEDA TKGQSPYFNP KLSGLVEGNN GDEKNGKMDS ITGFPNKSES EDFRVSKQKE 240 KRETGDGDDK TDPGLVNFDL NSKTGCDLIT SGNFGVEMKM KPSVFADRDI R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	25	75	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	25	75	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	25	75	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	25	75	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010518852.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518852.1	0.0	PREDICTED: myb family transcription factor PHL11-like isoform X1
Swissprot	C0SVS4	1e-115	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A178UFW4	1e-113	A0A178UFW4_ARATH; Uncharacterized protein
STRING	XP_010518852.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-94	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]