PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518819.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 391aa    MW: 44500.3 Da    PI: 5.799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+++++++sws+ ++sfvv+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++
  XP_010518819.1  14 FLAKTYEMVDDPSTDSVVSWSQGNKSFVVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANNDFVRGQPHLLKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010518819.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.1E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDENQGGSSS LPPFLAKTYE MVDDPSTDSV VSWSQGNKSF VVWNPPEFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE KWEFANNDFV RGQPHLLKNI HRRKPVHSHS LHNLQGQNPL  120
AESERQSMKD QIERLTKEKE GLLAELHKQE QERQGFELQV KLLKDRLQHL EQLQKTMVSS  180
VAQVLQKPGL ALKLSPKSET NDRKRRLPRI GYFQDETGLE ENQTCNSQRI GRENSPGPSH  240
AEQVEQLESS LAFWENLVSD VDGSLAQSSM NLEVDESTSC AESPSISCLE LNIDARPKSP  300
RIDMNSEPVA SKEQPAAPPT GVNDVFWEQF LTENPGSTEQ QEVQSERKDA EAKKDGNNGS  360
KTSDHGKFWW NPRNVHTLTE QMGHLTSAER T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-24610312120Heat shock factor protein 1
5d5u_B2e-24710322129Heat shock factor protein 1
5d5v_B2e-24710322129Heat shock factor protein 1
5d5v_D2e-24710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010518819.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518819.10.0PREDICTED: heat stress transcription factor A-4a
SwissprotO494031e-169HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1R3I0R70.0A0A1R3I0R7_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGXP_010518819.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-172heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]