PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

WOX

Protein Properties

Length: 293aa MW: 32585.5 Da PI: 6.3156

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010113358.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.4e-20	43	104	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L+el+++ r psae++++++++l +++ ++V++WFqN++a+e++ XP_010113358.1 43 STRWTPTSDQIRILKELYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 104 58**************98678***********************************97 PP
2	Wus_type_Homeobox	113.7	9.3e-37	42	106	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ XP_010113358.1 42 SSTRWTPTSDQIRILKELYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 106 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.13E-12	25	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.657	39	105	IPR001356	Homeobox domain
SMART	SM00389	6.2E-6	41	109	IPR001356	Homeobox domain
CDD	cd00086	2.18E-7	44	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-7	44	104	IPR009057	Homeodomain-like
Pfam	PF00046	8.0E-18	44	104	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDPNHDQQNQ LPSNDHHHQQ ETSTKGSSGG GGGGSGFLCR QSSTRWTPTS DQIRILKELY 60 YNNGVRSPSA EQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTS DNINMQRSPA 120 AGAAAALIPN VVSSGSSSAS MLGVNGQMGH YGYGAVTMEK TFRDCGSSES ISHGFGWVGV 180 DPYNSSPYAL FEKRSSNIPL DPYDQEYHYQ QQEDDDDDDH GHHETFGNIE TLPLFPMHSE 240 EDMMMINGYN NMIKSNFSDP TATAGGGYYS GSHVSSRTSL ELTLNSYRSP DSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010113358.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024032814.1	0.0	LOW QUALITY PROTEIN: protein WUSCHEL
Swissprot	Q8LL11	6e-69	WUS_PETHY; Protein WUSCHEL
TrEMBL	W9T0T9	0.0	W9T0T9_9ROSA; Protein WUSCHEL
STRING	XP_010113358.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-41	WOX family protein

Link Out ? help Back to Top
Entrez Gene	21409335

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]