PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010113245.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 269aa MW: 28194.2 Da PI: 5.3662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010113245.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.4e-05	158	178	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C + F ++ L H+r+H XP_010113245.1 158 CSVCRRDFYSWKALFGHMRSH 178 ********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	158	178	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MTNNKDESDK KFEAEKKPTT QQDEGDVGNP NAVVAMSAPL LARANPRQEV GEQQCRVQPF 60 SSDQDQVGGS QNPMPPPPPH FRAIQAPGGD GAKGSIGVSP AVTFMDGGSS GGGGVLVGGG 120 AAAAPSVRPI SDNRSSTSGI PLKRKSDVVA PPGVRPICSV CRRDFYSWKA LFGHMRSHPE 180 RQWRGCFPPP VEQPQQEQAL SAPLPAAYAE AGGAQGGTTR GLNIDLNEPH GPTVDDGAAH 240 TPPLENKKDG RPADFDINKI PPSDDEDIA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010113245.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010113245.1	0.0	uncharacterized protein LOC21409221
TrEMBL	W9SMQ7	0.0	W9SMQ7_9ROSA; Uncharacterized protein
STRING	XP_010113245.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10202	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-12	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	21409221