PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010113146.1 | ||||||||
Common Name | DREB6C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35172.6 Da PI: 8.953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 122 | 172 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge XP_010113146.1 122 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 172 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.65E-17 | 121 | 181 | No hit | No description |
PROSITE profile | PS51032 | 23.301 | 122 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 122 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-31 | 122 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 122 | 179 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.2E-13 | 123 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDRIHDTHFP LQFSKGLDIR SSLSNLILTG GTTTTLDSIF SHCVPSCSTT TKNDNNNPVL 60 EPLGSSVYLQ QRDLLQKFSS ENMTTYDFSR FSMTNPVQDS VSVSTTARSM AFSASVPYRK 120 KLYRGVRQRH WGKWVAEIRL PQNRMRVWLG TYDTAEAAAY AYDRAAYKLR GEYARLNFPN 180 LKDPSVLGFG DWTKLNALKS SVDAKIQAIC QKVKRNKAKK NAKKSEAVGD GKGSGGCKAE 240 NVVNSSSTSS SSAFSPLVLG PEMVSPTVSE DGFWRSENSP CSVSNECPMA AVAEDSGFEG 300 SSLARIPSFD PDLIWEVLAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 121 | 179 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010113146.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF678383 | 0.0 | KF678383.1 Morus notabilis dehydration responsive element binding transcription factor (DREB6C) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096822.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Refseq | XP_010113146.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 4e-73 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | W6FTE9 | 0.0 | W6FTE9_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010096822.1 | 0.0 | (Morus notabilis) | ||||
STRING | XP_010113146.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 8e-56 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21383795 | 21387405 |
Publications ? help Back to Top | |||
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