PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112967.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 212aa    MW: 23724.7 Da    PI: 10.0446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112967.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32133191159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  XP_010112967.1 133 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 191
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33119191IPR003657WRKY domain
SuperFamilySSF1182901.83E-28126192IPR003657WRKY domain
PROSITE profilePS5081129.057128193IPR003657WRKY domain
SMARTSM007745.3E-38133192IPR003657WRKY domain
PfamPF031067.1E-26134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGQEPLPPL SLISSPLLLP PQNPSFLFAP SANFPSSSSS STPNTNPNPN PNPNPLDYPE  60
IDWIGLLSAQ AGGRDQTMDT STKPNTILQN SAALSANSGE ENKGNNKRRA VGKMRKASRP  120
RFAFQTRSAD DILDDGYRWR KYGQKAVKNS SYPRSYYRCT HHTCNVKKQV QRLSKDTSIV  180
VTTYEGIHNH PCEKLMETLT PLLRQMQFLS RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25123190774Probable WRKY transcription factor 4
2lex_A6e-25123190774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112967.27e-99probable WRKY transcription factor 43
SwissprotQ8VWQ42e-55WRK56_ARATH; Probable WRKY transcription factor 56
SwissprotQ9FFS32e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLW9SMI01e-156W9SMI0_9ROSA; Putative WRKY transcription factor 56
STRINGXP_010112967.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.17e-58WRKY DNA-binding protein 43