PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112839.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 248aa    MW: 27743.4 Da    PI: 8.4875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112839.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1378124354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  XP_010112839.1  78 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 124
                     58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1468133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.85375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1178124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-1278127No hitNo description
Gene3DG3DSA:4.10.280.103.1E-1479138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1281130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-4163227No hitNo description
CDDcd048730.008163227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQPENPDLYR FLADNGLINV VGPYGFPVGT TSCDHHQHHQ FSAMQSFCSS SSYYPNSSKI  60
SGNSDSSTPH DRALAALKNH KEAEKRRRER INSHLDKLRS LLPCNSKTDK ASLLAKVVQR  120
VKELKEQTSE VAELQSLPSE TDEITVLSSG DYSGDGRLIF KASLCCEDRS DLIPDLIEIL  180
KSLHLTTLKV EMATLGGRIR NVLIVAADKE HSIESVHFLQ NALKSLLERS NSSERSKRRR  240
GLDRKMVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112839.10.0transcription factor bHLH106
SwissprotO806742e-84BH106_ARATH; Transcription factor bHLH106
TrEMBLW9SC440.0W9SC44_9ROSA; Uncharacterized protein
STRINGXP_010112839.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]