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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 325aa MW: 36528.9 Da PI: 4.4179 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 98 | 151 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k XP_010112600.1 98 KKRRLSVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 151 556899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.3 | 3.7e-42 | 98 | 188 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls eqv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ e+L+ke+++L++e++ XP_010112600.1 98 KKRRLSVEQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQATHNTLKDDYESLRKETDKLKAEVH 188 9**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-20 | 87 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 95 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.05E-16 | 96 | 154 | No hit | No description |
Pfam | PF00046 | 9.3E-17 | 98 | 151 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 100 | 160 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.3E-6 | 124 | 133 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-6 | 133 | 149 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.1E-14 | 153 | 195 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAGGRIFGGG AAGGSSSSSS LGLLLQNNKR TEPLDSLFLS GSCNSSSSSP SFFASRSMMS 60 FEDVHGGNGS NKTYFRSFGG GDDIVDDDFD EYFQQPGKKR RLSVEQVQFL EKSFEVENKL 120 EPERKVQLAK DLGLQPRQVA IWFQNRRARW KTKQLEKDYD VLQATHNTLK DDYESLRKET 180 DKLKAEVHVL SEKLQEREKE KENLELSENS NKLSQEPPEK PIADSEGEVS KVSAVEDISS 240 SVKSDIFDSD SPRFNEAVHS NSLLEPGDSS YVFEADQSDL SQDEEDNLPS YIFPKLEDVD 300 YSDKPTSSCN FGFPVEDHAF WSWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 9 | GGRIFGGG |
2 | 145 | 153 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112600.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | W9SZC2 | 0.0 | W9SZC2_9ROSA; Homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_010112600.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-41 | homeobox 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393411 |