PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112549.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 435aa    MW: 49011 Da    PI: 8.0199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112549.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-084170130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g WT+eEd+ll ++vk++  ++Wk I ++
   XP_010112549.1 41 KGGWTKEEDKLLSELVKKFQARNWKFIGKY 70
                     688**********************99876 PP
2Myb_DNA-binding68.11.5e-21120166148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+llv++v+++G+++W++Ia+ ++ gR +kqc++rw+++l
   XP_010112549.1 120 KGSWTEEEDDLLVKLVEKYGSKRWSAIAKSLP-GRMGKQCRERWYNHL 166
                      799*****************************.*************97 PP
3Myb_DNA-binding43.57.3e-14172214145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+e +  l+ +++  G++ W+ Iar ++ gRt++ +k++w+
   XP_010112549.1 172 KDAWTEEGERALAYYHQICGNK-WADIARFLP-GRTDNAIKNHWN 214
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.96636114IPR017877Myb-like domain
SuperFamilySSF466891.84E-1037121IPR009057Homeodomain-like
SMARTSM007171.5E-840116IPR001005SANT/Myb domain
PfamPF002495.5E-64170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-1543124IPR009057Homeodomain-like
CDDcd001676.73E-944114No hitNo description
PROSITE profilePS5129430.721115170IPR017930Myb domain
SuperFamilySSF466893.16E-31118213IPR009057Homeodomain-like
SMARTSM007171.4E-20119168IPR001005SANT/Myb domain
PfamPF002495.4E-21120166IPR001005SANT/Myb domain
CDDcd001674.03E-18122166No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27125172IPR009057Homeodomain-like
SMARTSM007171.8E-12171219IPR001005SANT/Myb domain
PROSITE profilePS5129417.998171221IPR017930Myb domain
PfamPF002492.2E-11172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-19173220IPR009057Homeodomain-like
CDDcd001676.86E-9174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKEEGIILES DKEAGLISDS PVSESSSHFG RTTGPTRRST KGGWTKEEDK LLSELVKKFQ  60
ARNWKFIGKY SIISVTSIDS NLLLPYNSSF KLWDAAHIPP RTDVQCLHRW QKVLNPQLVK  120
GSWTEEEDDL LVKLVEKYGS KRWSAIAKSL PGRMGKQCRE RWYNHLDPAI KKDAWTEEGE  180
RALAYYHQIC GNKWADIARF LPGRTDNAIK NHWNGTLKKK TDSCSLGGVG YLMTSQEPTR  240
PKDCTSEAVD LTSMSNTTDE PSSSSLTFDD DNIGQTEKRE KTRETPLCTG ETNHDSAITT  300
NAHVPDLNVP YCYTTPTKPA HPHYANDESP ESILRKSAMT YKNTPSIIRK RTPRSAVRSC  360
FSDVSSTLTR KTTSHTREKD VNSTDLPNSK HGWISNSISG PLIAVKPLER RLEYAFNEEK  420
DSIDVNLPDL GIIDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-61442219159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-61442219159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112549.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031952.10.0transcription factor MYB3R-3
TrEMBLW9SB710.0W9SB71_9ROSA; Myb-related protein 3R-1
STRINGXP_010112549.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.13e-69myb domain protein 3r-3