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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010112375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 288aa MW: 32938.2 Da PI: 8.4802 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 137 | 159 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H XP_010112375.1 137 SCSVCSRVYPTSRLLSIHISEaH 159 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.1 | 109 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 136 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 174 | 199 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 176 | 199 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MMVKDPSQPS RLPLKYCDQC PFFTDSVKTK AKANTEAISN SVAMDVEETQ LELGFPCWIP 60 VRRRFDPDSP FFASGNIERE LLAKQVALDL TEDEKHYLRN FVDEDFRGVF CSIVGCDARL 120 TSLEDFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD SFFQAKVARG YEMYQCLVEG 180 CSLKFKTYKS RHQHLVDKHK FPSSFEFFKK AHPSKKQRQK QQRKQSINKK ADASSMEVEN 240 EAIDDLVSAV SKLSTSDSPS SISFGRRHTR GLTFVPRAVQ RDKRPDST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 220 | KKQRQKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010112375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112375.1 | 0.0 | zinc finger protein 511 | ||||
TrEMBL | W9SYV0 | 0.0 | W9SYV0_9ROSA; Zinc finger protein 511 | ||||
STRING | XP_010112375.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-116 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Entrez Gene | 21394065 |