PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112233.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 310aa    MW: 33102.9 Da    PI: 4.9142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112233.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16219254134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  XP_010112233.1 219 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 254
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-1279114IPR010399Tify domain
PROSITE profilePS5132014.91179114IPR010399Tify domain
PfamPF062001.6E-1282113IPR010399Tify domain
PROSITE profilePS5101713.096146188IPR010402CCT domain
PfamPF062032.8E-16146188IPR010402CCT domain
SMARTSM004012.8E-12213266IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.064213261IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11216262No hitNo description
Gene3DG3DSA:3.30.50.102.4E-15217260IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-15218268No hitNo description
PfamPF003201.1E-13219254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPEPNQQASM YGRAAMATTT NMQSGQVDDD DNDVTAGEES IDNPQIRFDD AAAAMNGIQD  60
VPSNALYVPG VADYAPVAEN GGSDQLTLSF QGEVYVFDAV SPDKVQAVLL LLGGYEIPSG  120
IPAMGATPIG QRGMNQFVAK PIQPQRAASL NRFREKRKER CFDKKIRYNV RKEVAMRMQR  180
KKGQFTSAKT SSEELGSASS VWNATPGSGQ DENMQETSCT HCGISSKSTP MMRRGPAGPR  240
TLCNACGLKW ANKGILRDLS KVLNGNVQDA SVKETEQSDG DANDSAAVTT TANIASSNGD  300
AKTAVTEMTS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010112233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112233.10.0GATA transcription factor 28
SwissprotQ8H1G01e-76GAT28_ARATH; GATA transcription factor 28
TrEMBLW9SKI10.0W9SKI1_9ROSA; GATA transcription factor 28
STRINGXP_010112233.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-79ZIM-like 1