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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010111888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 24707 Da PI: 8.8035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_010111888.1 39 YSCNFCKRQFKSAQALGGHMNVH 61 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.78E-7 | 37 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-5 | 37 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.2E-6 | 39 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.614 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MERPNLSAIG KIIKEKWNCT DFMMSASNPC EIPWAVKNYS CNFCKRQFKS AQALGGHMNV 60 HRRERARLRL FSPLSTVAES CYNPSPNKFS SLSSSPSLSS SSATLSAKFL PQHYASHSML 120 SPPTASLSLP DHPLASTEKD RKTIFDFPRS CSSAVPLRDT TTKSMKAPVF EDGDLEGRFS 180 QKADYFKAFK TENVNITFDL ETGLLKDQNE GVDLELRLGY F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010111888.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111888.1 | 1e-164 | transcriptional regulator SUPERMAN | ||||
TrEMBL | W9SXL4 | 1e-163 | W9SXL4_9ROSA; Transcriptional regulator SUPERMAN | ||||
STRING | XP_010111888.1 | 1e-164 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21393090 |