PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111643.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 318aa    MW: 36421.4 Da    PI: 6.5698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111643.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l++ +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_010111643.1 14 RGPWTIEEDHKLINFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding543.9e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
   XP_010111643.1  67 RGGFTEVEENQIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.135961IPR017930Myb domain
SuperFamilySSF466893.91E-2811108IPR009057Homeodomain-like
SMARTSM007171.8E-71363IPR001005SANT/Myb domain
PfamPF002495.0E-121461IPR001005SANT/Myb domain
CDDcd001671.15E-51661No hitNo description
PROSITE profilePS5129425.21762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1567110IPR001005SANT/Myb domain
CDDcd001671.22E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLINFIL NNGIHCWRVV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEVEENQIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLG  120
LDPVTHKPIE QKQNNNVVVD NIEQKPADTT DTAESHTSKL SGLMSSGHED DQNSSTKPQD  180
HDRDRCAENR SESPADHDQT KVMSSGEPNN DAILLDNHEL ITCQKLDNLD YTWMNQEMFI  240
SNTITSYSSS TSSFSRLDQE SNNNNVNTNS IIDQSASVVQ SDPYSLQKWS ENNSIFSWAA  300
GFNYHPEQDL FFFENSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27121162105C-Myb DNA-Binding Domain
1msf_C2e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111643.10.0myb-related protein 315
TrEMBLW9SIZ50.0W9SIZ5_9ROSA; Myb-related protein 315
STRINGXP_010111643.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-84myb domain protein 40