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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010111631.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 414aa MW: 46840.2 Da PI: 5.5684 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.2 | 7e-26 | 75 | 157 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++k+lW+++s+kmre+gf rsp++C++kw+nl k++kk +++ + + +s +++y+++le XP_010111631.1 75 WVQEETRSLIGFRREVDGLFNTSKSNKHLWDQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVRVG--SRSAKMSYYEDLE 157 *******************************************************************998..45568******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-4 | 64 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.304 | 67 | 131 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0076 | 71 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.13E-28 | 73 | 138 | No hit | No description |
Pfam | PF13837 | 4.2E-19 | 74 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MYCSEKSRPV DFVGGGEEEE SEREMMMEVV SVSANGVLPP HQRAHTQMII LGENNSSGSG 60 EEQEVKAPKK RAETWVQEET RSLIGFRREV DGLFNTSKSN KHLWDQISAK MREKGFDRSP 120 TMCTDKWRNL LKEFKKARHQ VRVGSRSAKM SYYEDLEELL RDRNKHNNSN NSCNNNNNNN 180 NNNSAVAVLG SAYKTPAPPK VDSFIHFSDK GLEDASIPFG PIEASDRSAV NLERRLDHEG 240 DPLAITAADA VVASGVPPWN WRDPPGNGGE SQSSYCGRII TVKLGEYSRR IGIDGTADAI 300 KEVIKSAFRI RTKRAFWLED EDQVVRSLDR DMPLGNYTLH LDEGITIKLC FYDESDRVVV 360 RNEEITLYTE DDFRDFLTRR GFTGLRELSG YRRIDTLDDL QSGAMYQGVR LLGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-44 | 69 | 155 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010111631.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111631.1 | 0.0 | trihelix transcription factor GT-4 | ||||
Swissprot | Q9FX53 | 1e-163 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | W9SWV8 | 0.0 | W9SWV8_9ROSA; Trihelix transcription factor GT-1 | ||||
STRING | XP_010111631.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-156 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21400646 |
Publications ? help Back to Top | |||
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