PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111430.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 360aa    MW: 39476.9 Da    PI: 8.7301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111430.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13288333655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  XP_010111430.1 288 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 333
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16285347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-12286335No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-10288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSNTSQIHG YNQQTNSGLL RFRSAPSSLL ANSCESERLF SRFVDYRNDD SECLSDDNKS  60
AVMSMSGGQR SCSSSGLGLP PHYPRQSSNS VENQNGSSFG LVVNSQSSLI RQSSSPAGLF  120
SQISAPNGYA AIKGANYGGL DGEVSPSTNR LKTQISFSSR LPSSLGVLSQ ISEVGSENLG  180
ASTLDEEKLG NGNGDARFYG TGFPFGSWNE TLNFTDGFSG LRRDQENNRK LCSSTQNEDL  240
GNRIPLLSHH LSLPKNSAEV AIEKFLHFQD SVPCKVRAKR GCATHPRSIA ERVRRTRISE  300
RMRKLQELVP NMDKQTNTAD MLDLAVEYIK DLQKQFKTLS NNRANCKCLS MQKPIPNQVV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111430.10.0transcription factor bHLH130
SwissprotQ66GR36e-99BH130_ARATH; Transcription factor bHLH130
TrEMBLW9SG170.0W9SG17_9ROSA; Uncharacterized protein
STRINGXP_010111430.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]