PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

HB-other

Protein Properties

Length: 1970aa MW: 220775 Da PI: 5.0023

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010111176.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	223	278	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk XP_010111176.1 223 PKRQMKTPFQLETLEKAYALEAYPSESIRAELSEKLGLSDRQLQMWFCHRRLKDKK 278 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.2E-19	201	278	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	208	278	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.439	219	279	IPR001356	Homeobox domain
SMART	SM00389	5.8E-18	221	283	IPR001356	Homeobox domain
Pfam	PF00046	6.9E-16	223	278	IPR001356	Homeobox domain
CDD	cd00086	3.30E-14	224	278	No hit	No description
PROSITE profile	PS50827	16.451	746	805	IPR018501	DDT domain
SMART	SM00571	1.1E-21	746	805	IPR018501	DDT domain
Pfam	PF02791	2.7E-17	747	802	IPR018501	DDT domain
Pfam	PF05066	2.9E-15	928	996	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	1161	1205	IPR028942	WHIM1 domain
Pfam	PF15613	3.4E-13	1346	1418	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1970 aa Download sequence Send to blast
MQFEDEWYLM HKAINVIRHG GGNVNERVFE CISLIDICNP LMLVDCSLSG RGPADVAQIE 60 NSNPRSERGF SITSGRRVVS LMFQRLGGSG THGFAISCWQ LVVTTRGPRV PVNRQRVPMS 120 CKRLSSVELA AAPAATRNNL GGEVIGFDGR RLCSFDVGLN SRILEVEEDE FLLGSRSSAS 180 MEGVSEGENQ NNNDSSNNNH NHTPNNNNGG SKGNNSNEGH SKPKRQMKTP FQLETLEKAY 240 ALEAYPSESI RAELSEKLGL SDRQLQMWFC HRRLKDKKDG GPAKKPRKMV PALPESPIDE 300 LRAGPPELGS DYGSGSGSGS SPFGPAELRN VVSRGLADDL PPMGRRYYEP RQSMLELRAI 360 AIVEAQLGKP LREDGPVLGI EFDTLPPDAF GAPLVFFVGA VAEQQKRSGH PFEGKSYERH 420 EKLNKATART LHEYPFLPEP STSRTDVYGH VAPSHIHNSA LDGPTARSSS FAVSNEQLPR 480 IHGNQGHASR VRLSQQDKQG VSFPLPPVDD NCLPQKDPFT NTKVNSQISE HPVISPENSY 540 MLSDGQILAN DTVLRLERKR KCEEARIAKE VEAHEIRIRK ELEKQDNLRR KHEERLRKEM 600 ERQDRERRKE EERLMREKQR EEDRLRREQR REMERREKFL QKECLRAEKR RLKEELRKER 660 EAVRRKAAIE KATARKIARE SMELIEDEQL ELMEMAVSRK GLSSIISLDH DTMQNLESFR 720 DFLGAFPPKS VQLKSPFAVQ PWINLEENIG NLLMVWRFFI TFADVLELWP FTLDEFVQAF 780 HDYDSRLLGE IHVALLKLII KDIEDVARTP SSGLGMSQNG AANPGGGHPE IVGGAYTWGF 840 DIRNWQQHLN PLTWPEIFRQ LALSAGFGPQ LKKRSMAWSY LPDNNEGKSS EDAISTLRSG 900 SAAENAFAIM QEKGLLLPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTVLE LADKIQKSGL 960 RDLTTSKTPE ASISVALTRD TKLFERIAPS TYRVRAAYRK DPADAEAILS AARKKVQIFE 1020 NGFLAAEDAD EVERDEDSEC DDVDEDPEVD DLATPSSANI VTENYNEVNP EVDDLATPSS 1080 ANIVTENYNE VNPCSRSGKE NLCDDVALDL QNEFDKDSAS IPLSDSKDVN CPSALPEQFV 1140 ASEDAGGGNP DEENMEIDES KSGESWIQGL TEGEYSDLSV EERLNALVAL VGIANEGNSI 1200 RVVLEDRLEA ANALKKQMWA EAQLDKSRLK EENITKLDFP SFVGGKTEMH LARSAAEGSQ 1260 SPLPDINNRN TDLSPSVAES KKSVHDLNSV QNDLNSLPTE KTLVAQDFST GPDNFLAQQL 1320 AFASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND PGSGRIFVEL 1380 HDGNWRLIDT EEAFDALLMS LDTRGIRESH LRLMLQKIET SFRSVQSSSI TGRGLSIVKR 1440 ETDETSPDSR ANFDSPGSTI CGLNSDSDLV ETSSSFRIEL GRNETEKKAA LRRYQDFQKW 1500 MLEECKNSST LHAMKCGKMR CRQRLEICDF YLGLYSLEDS HCFSCHQTFS NSGNDLSRHA 1560 IQCKERSKSD FVDTSFPFGM RLLKALLALI EVSVPQEALQ SFWMGDRGKT WGVKLNASSS 1620 SEQLLQILTL FESVIKQDFL SSNYSTTEEL LGPCNQSGTS LHNISDPASV PVLPWIPQTI 1680 AAVALRLFDL DASIAYVPEE KPEPIEDKDK ELGEYIKLPT RFAPSRNDKE IELTELNYNA 1740 HVKEENRSQL KSSRNNYKRG RGAREQGRSK KLQRRVNGSK PGASRRNAMV NDNVIEGLRQ 1800 PGRKALKQGG VRGRRTVRKR RTGNKKVEET LPVHMPDIPS SPESGGESPR ILAEEWDDDN 1860 VNATPTKDDD NIVGEEEAME SDDNAQEEEY EQENWEVGYN GVSNKWNEGR MMEASDEDVD 1920 AYDEDDNGME GVGDGESEGD VDVSEESDDM PNRIENDQGS DSEVSDDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1970 aa Download sequence Send to blast

MQFEDEWYLM HKAINVIRHG GGNVNERVFE CISLIDICNP LMLVDCSLSG RGPADVAQIE  60
NSNPRSERGF SITSGRRVVS LMFQRLGGSG THGFAISCWQ LVVTTRGPRV PVNRQRVPMS  120
CKRLSSVELA AAPAATRNNL GGEVIGFDGR RLCSFDVGLN SRILEVEEDE FLLGSRSSAS  180
MEGVSEGENQ NNNDSSNNNH NHTPNNNNGG SKGNNSNEGH SKPKRQMKTP FQLETLEKAY  240
ALEAYPSESI RAELSEKLGL SDRQLQMWFC HRRLKDKKDG GPAKKPRKMV PALPESPIDE  300
LRAGPPELGS DYGSGSGSGS SPFGPAELRN VVSRGLADDL PPMGRRYYEP RQSMLELRAI  360
AIVEAQLGKP LREDGPVLGI EFDTLPPDAF GAPLVFFVGA VAEQQKRSGH PFEGKSYERH  420
EKLNKATART LHEYPFLPEP STSRTDVYGH VAPSHIHNSA LDGPTARSSS FAVSNEQLPR  480
IHGNQGHASR VRLSQQDKQG VSFPLPPVDD NCLPQKDPFT NTKVNSQISE HPVISPENSY  540
MLSDGQILAN DTVLRLERKR KCEEARIAKE VEAHEIRIRK ELEKQDNLRR KHEERLRKEM  600
ERQDRERRKE EERLMREKQR EEDRLRREQR REMERREKFL QKECLRAEKR RLKEELRKER  660
EAVRRKAAIE KATARKIARE SMELIEDEQL ELMEMAVSRK GLSSIISLDH DTMQNLESFR  720
DFLGAFPPKS VQLKSPFAVQ PWINLEENIG NLLMVWRFFI TFADVLELWP FTLDEFVQAF  780
HDYDSRLLGE IHVALLKLII KDIEDVARTP SSGLGMSQNG AANPGGGHPE IVGGAYTWGF  840
DIRNWQQHLN PLTWPEIFRQ LALSAGFGPQ LKKRSMAWSY LPDNNEGKSS EDAISTLRSG  900
SAAENAFAIM QEKGLLLPRR SRHRLTPGTV KFAAFHVLSL EGSKGLTVLE LADKIQKSGL  960
RDLTTSKTPE ASISVALTRD TKLFERIAPS TYRVRAAYRK DPADAEAILS AARKKVQIFE  1020
NGFLAAEDAD EVERDEDSEC DDVDEDPEVD DLATPSSANI VTENYNEVNP EVDDLATPSS  1080
ANIVTENYNE VNPCSRSGKE NLCDDVALDL QNEFDKDSAS IPLSDSKDVN CPSALPEQFV  1140
ASEDAGGGNP DEENMEIDES KSGESWIQGL TEGEYSDLSV EERLNALVAL VGIANEGNSI  1200
RVVLEDRLEA ANALKKQMWA EAQLDKSRLK EENITKLDFP SFVGGKTEMH LARSAAEGSQ  1260
SPLPDINNRN TDLSPSVAES KKSVHDLNSV QNDLNSLPTE KTLVAQDFST GPDNFLAQQL  1320
AFASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND PGSGRIFVEL  1380
HDGNWRLIDT EEAFDALLMS LDTRGIRESH LRLMLQKIET SFRSVQSSSI TGRGLSIVKR  1440
ETDETSPDSR ANFDSPGSTI CGLNSDSDLV ETSSSFRIEL GRNETEKKAA LRRYQDFQKW  1500
MLEECKNSST LHAMKCGKMR CRQRLEICDF YLGLYSLEDS HCFSCHQTFS NSGNDLSRHA  1560
IQCKERSKSD FVDTSFPFGM RLLKALLALI EVSVPQEALQ SFWMGDRGKT WGVKLNASSS  1620
SEQLLQILTL FESVIKQDFL SSNYSTTEEL LGPCNQSGTS LHNISDPASV PVLPWIPQTI  1680
AAVALRLFDL DASIAYVPEE KPEPIEDKDK ELGEYIKLPT RFAPSRNDKE IELTELNYNA  1740
HVKEENRSQL KSSRNNYKRG RGAREQGRSK KLQRRVNGSK PGASRRNAMV NDNVIEGLRQ  1800
PGRKALKQGG VRGRRTVRKR RTGNKKVEET LPVHMPDIPS SPESGGESPR ILAEEWDDDN  1860
VNATPTKDDD NIVGEEEAME SDDNAQEEEY EQENWEVGYN GVSNKWNEGR MMEASDEDVD  1920
AYDEDDNGME GVGDGESEGD VDVSEESDDM PNRIENDQGS DSEVSDDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	278	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010111176.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-46	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031043.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_024031044.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	W9SHQ2	0.0	W9SHQ2_9ROSA; Homeobox protein 10
STRING	XP_010111176.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Entrez Gene	21398173