PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010111012.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 274aa    MW: 30120.5 Da    PI: 5.0091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010111012.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161662147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k ie++  r +tfskRr gi KK +EL +LC+ae  ++ifs++gk +
  XP_010111012.1 16 KMIEDEDDRLITFSKRRSGIYKKTSELVTLCGAELGLVIFSPSGKPF 62
                    679*****************************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-24867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.694868IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-23982IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-161030IPR002100Transcription factor, MADS-box
PfamPF003195.6E-211864IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEANRQPKGK QKIAMKMIED EDDRLITFSK RRSGIYKKTS ELVTLCGAEL GLVIFSPSGK  60
PFSFGHPSAD AAVDRFMGDR APNAVESAAH PIVEAFRRRK VEEFNERHSS LADRLEDEKA  120
LRKALANKLN GLALASQKRL MNAAGENDDE EEEEEEEEEE EKQWWEAPLD GLDAEMLDAR  180
YQSLRNLHEK ICSHVKERMV NANCSTFGGN AVAPPPLPPP QQPPNSPSYG GAGKGSSPAF  240
GGAGNQQANQ LLNWTGFPSP FPGLGNGNNN NVQY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010111012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111012.10.0agamous-like MADS-box protein AGL62
TrEMBLW9SVC80.0W9SVC8_9ROSA; Agamous-like MADS-box protein AGL62
STRINGXP_010111012.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-32AGAMOUS-like 57