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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010110815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 28800.3 Da PI: 6.858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.9 | 7.4e-27 | 11 | 146 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rFhP+deel+ +yL k ++ e ++ i e+d+y ++P +Lp+ + k+ ++F+ + + +++ +r ++sg+W+ + XP_010110815.1 11 LPPGVRFHPSDEELLRHYLSGKNAEPGgarAEGNNLIGELDLYGYDPFELPNsacyayG--CGGKKRHWFCYTGGGAVRERGGKRRARSGFWRRK 103 79*******************988776655666667***************54665332..2445455555555554555555666799****** PP NAM 87 gkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyr 127 g+ + v+ + ++ + g+++ +vfy g +a+++ +t+Wv+ ey+ XP_010110815.1 104 GRMRIVMGQgGRGDLGTRTKFVFYLGnSAKTAFRTNWVLYEYA 146 *******9966678**********874677778*********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-31 | 6 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.044 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-16 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGDANATSFP LPPGVRFHPS DEELLRHYLS GKNAEPGGAR AEGNNLIGEL DLYGYDPFEL 60 PNSACYAYGC GGKKRHWFCY TGGGAVRERG GKRRARSGFW RRKGRMRIVM GQGGRGDLGT 120 RTKFVFYLGN SAKTAFRTNW VLYEYAPIDH LKASFVLCRV FNKSCPRNSI SENGLVSCAE 180 ESFSAVRHIG IQHDGDNISS RNDDIEVDDQ IATRPAPMAS IQVPLCSEPN TQMNIDAFTD 240 DHLLAILNED FLELDDLNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-22 | 7 | 164 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010110815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110815.1 | 0.0 | NAC domain-containing protein 19 | ||||
TrEMBL | W9S697 | 0.0 | W9S697_9ROSA; NAC domain-containing protein 19 | ||||
STRING | XP_010110815.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 3e-25 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385838 |