PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010110221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23390.1 Da PI: 8.3891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f++aeeAa+a++aa+ +l+g XP_010110221.1 29 RFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDAAAWSLRG 78 69*******.**********883....5**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.67 | 29 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.91E-18 | 29 | 87 | No hit | No description |
SMART | SM00380 | 3.7E-36 | 29 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 30 | 87 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-10 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRRGGKSSDP TRTRIDQKQR PPSHLQEVRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD 60 SAEEAARAYD AAAWSLRGPK AKTNFPNPNP NFHDERVSSK IDVIQASRPT SSSLSSTVES 120 FSGPRVSAQA PAPAPRPHRR PVRVVPPDDC HSDCDSSSSM VDDGDDCVLT SSSCRVLPFD 180 LNLPPSRMMD DSDWCGGGVD DDELRATALC L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 29 | 87 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010110221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229640 | 3e-42 | KP229640.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF17) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110221.1 | 1e-152 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 5e-38 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | W9S4K3 | 1e-150 | W9S4K3_9ROSA; Ethylene-responsive transcription factor 3 | ||||
STRING | XP_010110221.1 | 1e-151 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 7e-25 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393143 |