PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010110220.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 439aa    MW: 47549.2 Da    PI: 8.2666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010110220.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.5e-124873126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C f++rtG C yG++C+F+H+
  XP_010110220.1 48 PGEPDCIFYLRTGSCGYGNNCRFNHP 73
                    5789*********************8 PP
2zf-CCCH38.51.9e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++CkF+H++
  XP_010110220.1  92 QPDCGYFLKTGTCKYGSTCKFHHPR 116
                     789********************96 PP
3zf-CCCH38.91.5e-12139161527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G+ CkF+H++
  XP_010110220.1 139 SCPYYMRTGSCKFGAACKFHHPQ 161
                     6********************97 PP
4zf-CCCH34.63.3e-11284309227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tG CkyG  Ck++H++
  XP_010110220.1 284 DQPECRYFMSTGNCKYGTDCKYHHPK 309
                     689*********************96 PP
5zf-CCCH37.24.8e-12327352227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++++ +G+CkyG++CkF H+p
  XP_010110220.1 327 GQAVCSYYSMYGICKYGPTCKFDHPP 352
                     7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5824775IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54774IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79389117IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-689116IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727134162IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201282310IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6282309IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6285310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5288309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6325350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9327352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPDTRQTQKN AVPNQSDGNI EDAIWRLKIN DNQEGGGVAQ SNVLPDRPGE PDCIFYLRTG  60
SCGYGNNCRF NHPAYASQGA QFNGDLPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG  120
AGPVSFNILG FPMRQEEKSC PYYMRTGSCK FGAACKFHHP QPASLGTVFP APPPAFGSAG  180
SAVLPSSNLP YAGGLPAWSF PRVPYVPGPQ PQQQPYVPVV ISPSQGIISA GGWNTYVGNV  240
SPVPSTGIVG SNLVYNPRNP VESGSAGQMH LLSNSGLSLP ERPDQPECRY FMSTGNCKYG  300
TDCKYHHPKE RNAQSASNPL GLPSRPGQAV CSYYSMYGIC KYGPTCKFDH PPLSYPYNYG  360
LSLPAMLDSP FLSHQRSFAT VPTIETSHSI PAKSFDVVQK PLKNKSWNSE TRLSEDSSKH  420
VGSLVHTPPS SEASEDQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010110220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110220.10.0zinc finger CCCH domain-containing protein 3
TrEMBLW9SF520.0W9SF52_9ROSA; Zinc finger CCCH domain-containing protein 3
STRINGXP_010110220.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-110C3H family protein