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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 381aa MW: 42498.8 Da PI: 5.4059 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.6 | 1e-15 | 53 | 142 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+++ + +Li+a ++ +l+rg+l++++W++v++++ + ++ +r+ +qCk++++ ++k+yk +k++ ++ + +s++ +fd+ XP_010109877.1 53 CWSEEATATLIDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGAFTSSWTFFDRF 142 7****************************************99999*****************************99999*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.6E-25 | 51 | 143 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGDITDSLTP PPPAPTTTTT TTTPSSSAAA APTPLFQNQN SSSSRPMPVR EDCWSEEATA 60 TLIDAWGRRY VELNRGNLRQ KDWQDVADAV NALHGHTKKT HRTDVQCKNR IDTIKKKYKV 120 EKARVSSSNG AFTSSWTFFD RFDVLIGSNQ KKPSPPSLSP SPPVAVPLLP YRKASSTALV 180 AIPQKRSAPP PVAADEGFFR RNYSAMAAAA AAAEAEEDED DLENEEEVDE EEEEERESED 240 EGGVAVGDAE GMRRLARAIA RFGAVYEKVE GEKLRQMVEL EKQRMQFAKD LEVQRMRMFM 300 DTQVQLERIK RGKRSASNVQ TVMIYMIEFA HSDVCPARSM LERSGLLELT VMFWYVRVGI 360 VEEGDVHNCK RSSYSSVAAL R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109877.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030175.1 | 0.0 | trihelix transcription factor ASIL2 isoform X1 | ||||
TrEMBL | W9SBP6 | 0.0 | W9SBP6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010109877.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 2e-51 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Entrez Gene | 21387331 |