PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010109550.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 308aa MW: 33958.4 Da PI: 6.8742

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010109550.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	152	198	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++ + + +K +Ka+iL A + + +L XP_010109550.1 152 KACREKLRRDRLNERFLELVAVMEPG---RLPKTDKAAILSDAARILTQL 198 5689*******************8...89**********9998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.045	147	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.50E-6	151	201	No hit	No description
SuperFamily	SSF47459	1.06E-10	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	152	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-6	153	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-9	154	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.20.5.170	8.5E-5	214	245	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDMASSENSN WLFDYALMED IAVLGGEFPG APTAFIWPPQ PLSTSPNARW GEVIFTHSIG 60 LGTVVGALAF APGVQGSNPG NDLTFSRACH STGASLALGV EVECSYSDSL KEVKSRKRVE 120 VDCPSGDSDS IKEVGSRKRP RSDQSSGASC SKACREKLRR DRLNERFLEL VAVMEPGRLP 180 KTDKAAILSD AARILTQLRS ESRHLKETID DLHEKIKELK AEKNELREER QRLREDKERL 240 EQQVKAMAAQ TSFLPHSPAI SSALTVQGQS TNKLMPFISY PGGVTMWQMM PQTPLDTSQD 300 HIRHPPVA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269\|PubMed:17028341}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010109550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029985.1	0.0	transcription factor ILR3
Swissprot	Q9FH37	2e-68	ILR3_ARATH; Transcription factor ILR3
TrEMBL	W9SRR3	0.0	W9SRR3_9ROSA; Uncharacterized protein
STRING	XP_010109550.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1602	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	4e-57	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21401260

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Aparicio F,Pallás V The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response. Mol. Plant Pathol., 2017. 18(2): p. 173-186 [PMID:26929142] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Samira R, et al. The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis. Plant Mol. Biol., 2018. 97(4-5): p. 297-309 [PMID:29882068]