PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010109197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HSF | ||||||||
Protein Properties | Length: 425aa MW: 48595.5 Da PI: 5.7661 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.9 | 9.3e-35 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+ ++ ++sws ng sfvv++++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+++ll++ XP_010109197.1 16 FLLKTYELVDDQMTDPIVSWSPNGCSFVVWNPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLRN 101 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_010109197.1 102 IHRRKP 107 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.5E-61 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.53E-35 | 12 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 13 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-20 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-20 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-20 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MEGSQGSSSS SAPAPFLLKT YELVDDQMTD PIVSWSPNGC SFVVWNPTEF AKDLLPMYFK 60 HNNFSSFVRQ LNTYGFRKID PDQWEFANEE FIRGQRHLLR NIHRRKPVHS HSSNNQGQSA 120 VPLTDTERHE YEKEIKALKH DKNSLHSELQ RHERERQEFD LQIQLLHERF QNIEHRQKQL 180 TVYLAELVQK PGLASILLQE SEMHNKKRRL LSSSHFCDES NLEESWDLKL KRTSIEKLSS 240 NILKMDHIEK LEGSVEFWES FLYGIGDEFI DMGAFSQASP IVITEIEDAE MKCRSSSPMS 300 HLSSPHTFDV HSPPDVPCPD AIFFACLHND VAPKSSVIDM NSSPTGAPEA KASKEQDVGL 360 KVVVPAKVND LFWEQCLTET PGSSDMNNED KVSSDGKTGL HRKDWWNMNN VDNLTTQMGH 420 LTPAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-25 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-25 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-25 | 3 | 105 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010109197.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109197.1 | 0.0 | heat stress transcription factor A-4c | ||||
TrEMBL | W9SQV3 | 0.0 | W9SQV3_9ROSA; Heat stress transcription factor A-4b | ||||
STRING | XP_010109197.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14100 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 9e-83 | heat shock transcription factor A4A |
Link Out ? help Back to Top | |
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Entrez Gene | 21384999 |