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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010108202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HSF | ||||||||
Protein Properties | Length: 236aa MW: 27032.5 Da PI: 9.0625 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.6 | 1.7e-32 | 46 | 161 | 2 | 102 |
HHHHHHHHHCTG........................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS HSF_DNA-bind 2 Flkklyeilede........................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 Fl+k+y++le+ + +++isw+e+gn fvv+ + ef++ +LpkyFkh+nf+SFvRQLn+YgFkk+++++ XP_010108202.1 46 FLSKTYNLLEEGgagiimssdhdrsiingeyyagsyKRSSVISWNEEGNGFVVWSPAEFSELLLPKYFKHNNFSSFVRQLNTYGFKKTSSKR--- 137 8999999999555666666666777777777777779999************************************************9998... PP TTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 73 kskekiweFkhksFkkgkkellekikrkks 102 weFkh++F+kg k++l +i rkk XP_010108202.1 138 ------WEFKHDKFQKGCKHMLVEITRKKC 161 ......*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.6E-34 | 38 | 154 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-36 | 42 | 159 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-28 | 46 | 159 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-25 | 83 | 159 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAKNEVLELD LNQYYGGGDQ ITSSSTTSST TLSSGQSPMT KSPTPFLSKT YNLLEEGGAG 60 IIMSSDHDRS IINGEYYAGS YKRSSVISWN EEGNGFVVWS PAEFSELLLP KYFKHNNFSS 120 FVRQLNTYGF KKTSSKRWEF KHDKFQKGCK HMLVEITRKK CEPSVFPAFR KASDRDSAAA 180 TEENNRLQLM EENKNLRREK VELQTQIAHF KALEVKLLDC LSHYMGDHHN KFRRLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-15 | 85 | 159 | 19 | 104 | Putative transcription factor |
5d5x_B | 2e-15 | 85 | 159 | 19 | 104 | Putative transcription factor |
5d5x_E | 2e-15 | 85 | 159 | 19 | 104 | Putative transcription factor |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010108202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108202.1 | 1e-179 | heat stress transcription factor B-2a | ||||
TrEMBL | W9RZ03 | 1e-177 | W9RZ03_9ROSA; Heat stress transcription factor B-2a | ||||
STRING | XP_010108202.1 | 1e-178 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 5e-39 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Entrez Gene | 21397663 |