PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107990.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 364aa    MW: 40958 Da    PI: 6.2347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107990.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l +++k +G g W+  +++ g++R++k+c++rw++yl
   XP_010107990.1 14 RGAWTAMEDKILTEYIKVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.54.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
   XP_010107990.1  67 RGNITRDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.585961IPR017930Myb domain
SuperFamilySSF466898.03E-2812108IPR009057Homeodomain-like
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
PfamPF002495.0E-141461IPR001005SANT/Myb domain
CDDcd001671.87E-101661No hitNo description
PROSITE profilePS5129423.17262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2365115IPR009057Homeodomain-like
SMARTSM007174.2E-1566114IPR001005SANT/Myb domain
PfamPF002493.5E-1467110IPR001005SANT/Myb domain
CDDcd001671.28E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRSPCCPKE GVNRGAWTAM EDKILTEYIK VHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKFQSGS  120
HDRAANTTSC PAKPSSSNKL HKLPPPPPPP PSSNKTTQFS GDQKPSKTCS TTSTPNSRVV  180
RTKATRCTKV VLLPQEDALK PPVLPLDHHH QHDNSSKPAV DAVINDIYCQ MVAGEGQLDY  240
EPLVPFDESN SSQIMALHDL DFETDDKFLS DIFNINCMDL ELSDCFGNVE GHEYDRVIDD  300
HIDIDSDFHN VIISSSSNTN TNKLGCDETL LFSQDMALFG VELQSDTTVS MIDPRDEMDN  360
WLQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141187110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107990.10.0myb-related protein Zm38
TrEMBLW9S6E40.0W9S6E4_9ROSA; Anthocyanin regulatory C1 protein
STRINGXP_010107990.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-61myb domain protein 7