PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107666.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bZIP
Protein Properties Length: 262aa    MW: 28621.9 Da    PI: 6.2319
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107666.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.24e-0989147459
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele...elkkevakl 59 
                      k  +r   NReA r++R++Kka+ + Le++v  L a N++L k+l+    l+ eva+l
  XP_010107666.1  89 KKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRAINQQLLKRLQgqaALESEVARL 147
                     577899999**********************************9997322466666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-1383154No hitNo description
SMARTSM003381.6E-986153IPR004827Basic-leucine zipper domain
PfamPF077161.7E-1387140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.04888135IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.22E-790136No hitNo description
CDDcd146861.78E-1292145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDDGEVDFSN QEVFSSPNIG GELPSSCSMD SFFDELLKDT HACTHTHTCN PPGPDFSHTH  60
TCFHVHTKIV PASGEDKAAS DDTAESTEKK SKKRPLGNRE AVRKYREKKK ARAASLEDEV  120
VRLRAINQQL LKRLQGQAAL ESEVARLKCL LVDIRGRIEG EIGSFPYQKP VNQNLTNTTM  180
PGAYVMNPCN MQCDDQVYCL HPGMDGKCDG AVLNGQSFSG CEFESLQCLA NQNSGSKELP  240
GCELGNASHV NSSGSNKRKG EP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107666.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107666.20.0basic leucine zipper 23
SwissprotQ8GTS21e-121BZP23_ARATH; Basic leucine zipper 23
TrEMBLW9SLV40.0W9SLV4_9ROSA; Uncharacterized protein
STRINGXP_010107666.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25673277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-109bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]