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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 38128.6 Da PI: 8.1401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.2e-52 | 19 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deel+v+yL++kv +++l++ ++i+++d+yk++Pw+Lp k++ +++ew+fF++rd+ky++g+r+nra+ sgyWkatg+dk+++s+ XP_010107555.1 19 LPPGFRFHPSDEELIVHYLRNKVVSRPLPAPSIITDIDLYKYNPWELPGKASFGDEEWFFFTPRDRKYPNGSRPNRAAGSGYWKATGTDKHIFST 113 79****************************999***************988899****************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykgr pkg+kt+W+m+eyrl XP_010107555.1 114 scGTKSIGVKKALVFYKGRPPKGVKTEWIMNEYRL 148 888999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-62 | 11 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.919 | 19 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 20 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEIMINMEQN NSTHDQLQLP PGFRFHPSDE ELIVHYLRNK VVSRPLPAPS IITDIDLYKY 60 NPWELPGKAS FGDEEWFFFT PRDRKYPNGS RPNRAAGSGY WKATGTDKHI FSTSCGTKSI 120 GVKKALVFYK GRPPKGVKTE WIMNEYRLLD SMIWSTTSTT TNPKRKGSMR LDDWVLCRVR 180 QKSNNNTRST WDSDRNCSSY NHDHDHQNHN HNPNQTCSKS TTSTPSQNLE MNMIIDYLYK 240 DFPMLPYIFA TSQQPLIPCV EKTTASSTVS FQSSENINPK PSSTGTSVSR YDDHGLKCRW 300 DMDIHQDQSI KGANDHDWSS KIQEISGPVY DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-66 | 5 | 185 | 1 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107555.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107555.2 | 0.0 | NAC domain-containing protein 18 | ||||
Swissprot | A0SPJ6 | 6e-80 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | W9SLK6 | 0.0 | W9SLK6_9ROSA; NAC domain-containing protein 29 | ||||
STRING | XP_010107555.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-78 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Entrez Gene | 21407150 |
Publications ? help Back to Top | |||
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