PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107438.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 304aa    MW: 34841.4 Da    PI: 8.6155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107438.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+++k++G g+W+  +++ g+ R++k+c++rw +yl
   XP_010107438.1 20 KGAWTPEEDKILVRYIKLHGCGSWRCLPKHAGLLRCGKSCRLRWKNYL 67
                     79******************************99************97 PP
2Myb_DNA-binding41.62.8e-1373118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +v+++  lG++  ++Ia+ +  gRt++++k++w+++l
   XP_010107438.1  73 RGPFSEEEENTIVRLHSTLGNR-GAAIASQLE-GRTDNEIKNYWNTHL 118
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9791571IPR017930Myb domain
SuperFamilySSF466892.17E-2718114IPR009057Homeodomain-like
SMARTSM007178.1E-121969IPR001005SANT/Myb domain
PfamPF002494.1E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-232174IPR009057Homeodomain-like
CDDcd001675.99E-102267No hitNo description
SMARTSM007173.7E-1272120IPR001005SANT/Myb domain
PROSITE profilePS5129415.8772122IPR017930Myb domain
PfamPF002491.4E-1173118IPR001005SANT/Myb domain
CDDcd001676.65E-875118No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2275121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKMKIRKKRC CDDHKDGVRK GAWTPEEDKI LVRYIKLHGC GSWRCLPKHA GLLRCGKSCR  60
LRWKNYLRPG IKRGPFSEEE ENTIVRLHST LGNRGAAIAS QLEGRTDNEI KNYWNTHLKK  120
RFICLDDKRQ QTKSSSLFIH HIGNVELQSP ATRHMIQWES IRVEAEVRLS MEPSLLYSTP  180
NANSDHFLLL WNSEVGKSFR EIKVNDGSIY RSPAFKTFCH AKFGSNSSFH VEACRTKTSP  240
STEMAHEQEE DNFKRKANSD SSGECELSDS SLSVSELLLD SPSDYDSDLL LCKENDFAIS  300
LQRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24201227108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107438.10.0transcription factor MYB41
TrEMBLW9S4V40.0W9S4V4_9ROSA; Myb-related protein Myb4
STRINGXP_010107438.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-76myb domain protein 17