PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010107406.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family FAR1
Protein Properties Length: 886aa    MW: 101959 Da    PI: 6.0169
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010107406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.71.4e-2674160188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     kfYn+YA+ vGFsvrk+  ++sk +g++++r+f+Cs+eg+r+++k++ ++ +++r+etrtgC a++ ++++ +gk++vt++e++HnH+
  XP_010107406.1  74 KFYNKYARLVGFSVRKDWVNRSKVHGQVVSRKFTCSREGYRRRDKRD-VNVKKHRKETRTGCLAHMIITRQPNGKYRVTHFEEQHNHD 160
                     6*******************************************999.999************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2474160IPR004330FAR1 DNA binding domain
PfamPF105513.2E-25284378IPR018289MULE transposase domain
PROSITE profilePS5096610.398564600IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-6574598IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-8575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MDRDDDDFGS LHEENKGVEL EASNDLDLNV EQDYCSQKVV HANGIHSTHS SKDDGADAIL  60
KIGTEFESDE HAYKFYNKYA RLVGFSVRKD WVNRSKVHGQ VVSRKFTCSR EGYRRRDKRD  120
VNVKKHRKET RTGCLAHMII TRQPNGKYRV THFEEQHNHD NVNLGNLQML SLQREFSVDQ  180
SAEADLAENL GPQSKSAIAS MNRQYRVRDF LDDFASNFDN HLQTERIRDM KEGEAGNLLH  240
YFQRQHFQNP SFFYALQLDI DDKVSNIFWA DDCMVSDYGH FGDVVCLDSI CRTKKDHFPF  300
VQFIGVNHHK QAVIFAAALL YDDTVDSFKW LFRTFLETMS GKKPKAIYTD QDAAIIEAIH  360
SVLPETIHCF CVWQMYENAI KNISNVVKDS QFFASDFRRC IYYSKDEEDF FHAWEDMLDK  420
HSLQQNEWLK WMFREREKWA VVYGRNTFFV DVKGSHLVES LFIDLRNYLN SGLDVLQFFK  480
NFENIVDEQR YKEIEASDEM SKCMPRLMGN VVLLKHSSEI YTPRAFEVFQ QGYEKCLNVV  540
VNLCSEDGSL FEYKANKFGQ TREYNLTFNS SDDTVTCSCK KFEYVGFLCS HALKVLDQQN  600
IKVVPSRYIL KRWTKDARLG SATECNEFTM QDNPKIIIAS RYKELCRKIL TISARASESE  660
EAFLFASRQF DEVMEGVERM VILKSEESQA GTSSSNGANA SEGKHAEIFL DGNAIEDQDD  720
SRAKHRESAI LGGCQLKILN NKGSTAKGIH NVEGLAQSTV TCVSSSPPVY VSPQATTGNP  780
IMQGLYNFEA NQVVKCMYGE PNLATDQQTN SNMYQPPNFF TNQHDSPSQS QLLQEPLIHN  840
TYPESVSNTS QLRQEMDLDI QHPHSASFLV FDQRYRSPDT PYLGHK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010107406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107406.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024028658.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLW9RWW40.0W9RWW4_9ROSA; Protein FAR1-RELATED SEQUENCE 5
STRINGXP_010107406.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-107FAR1-related sequence 5