PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010107204.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 308aa MW: 34150.8 Da PI: 10.3383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010107204.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.4e-06	152	186	6	40
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsK 40 +++Er RR ri ++ +L+el+P+ + k+ + l+K XP_010107204.1 152 SIAERERRTRISGKLKKLQELVPNmD-KEARGLLNK 186 689*********************77.333333555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.826	146	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-5	149	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-5	151	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSTAAGFSLT RGTGGYGSQG GDNCGHGVSR LKSQLSFTRQ DSLSQISEVS EDVIDGVNSD 60 NGHHNATHSF ATSFGMDSWD NTNSIVFSAP PGKRAKTMDG DFYNCLNVLE SQFSLPQTTL 120 EMAAVEKLLQ IPEDSVPCKI RAKRGCATHP RSIAERERRT RISGKLKKLQ ELVPNMDKEA 180 RGLLNKTSVS SIRKEKEDQN EALAKNQGKT EGGRERVRKG VLMNTTDNMN LLRKCGFSKQ 240 AMQTCWIWLY NISRVFKTKS RRSTKNLSIA PAVVNKLRVS MQELWRMVPS KGSSLEKALE 300 VYSSPKSH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010107204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028533.1	1e-129	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	2e-53	BH128_ARATH; Transcription factor bHLH128
TrEMBL	W9SKN8	0.0	W9SKN8_9ROSA; Uncharacterized protein
STRING	XP_010107204.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-51	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21404569

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]