PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010107118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 624aa MW: 69335.9 Da PI: 4.5364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.5 | 2.7e-32 | 9 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+G+ F+Ptdee++++yLk k+ gk+ ++++ i+ev d+++++Pw+Lp +k+k++++ w+fF++rd + + ++r+tk+g W tg++ ++ XP_010107118.1 9 LPVGVGFRPTDEEIMNHYLKLKMIGKDSKVDNGIAEVnDVCTFDPWELPpkSKIKSKDQIWWFFTRRDPERK---TTKRKTKTGSWGLTGEEGQI 100 799***************************888****9**********87459999999*******998765...68889999************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 + ++g++ g+kk vf++ ++g++++Wv+ ey+ XP_010107118.1 101 KGRDGRVLGTKKYVVFFN-GPNRGRRSNWVIREYH 134 *****************5.67789**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-33 | 7 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.663 | 9 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-17 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MTISLPEDLP VGVGFRPTDE EIMNHYLKLK MIGKDSKVDN GIAEVNDVCT FDPWELPPKS 60 KIKSKDQIWW FFTRRDPERK TTKRKTKTGS WGLTGEEGQI KGRDGRVLGT KKYVVFFNGP 120 NRGRRSNWVI REYHPLPENV LPKQRHYVIC RLEYKTDEKA GLTSRNEGEP SCNITSEVEI 180 APSAISEVHG HAEGNAESPS QLVFSPDDFL TEVEMSSIFE DCLNDDQKAQ FVHENHPNPE 240 NSLPHQMPDL TCCLESKTDE NSGTLGCNIG EPSIEIRAEI ENPVAHAAIS EVPGHGEGNA 300 KVLSQPVLSP DDYLTAEDIR SIFSDGFNGG QKINSVMLEH HPELDNNLPQ QMPDLTCCLE 360 SKTDENSGTL GCNIGEPSIE IRAEIENPVA HAAISEVPGH GEGNAKVLSP DDYLTAEDIR 420 SIFSDGFNGG QKINSVMHEH HPELDSNLPQ QWPYLTCCLE NKTDESVGSL DCNIGRPSSN 480 ITSDIENQVA PTAIPVVHGD TEVNAELLWQ TFLTPDHHAT EKDISLILSN SLSDDHHNEW 540 HALCGAAEPE MPPAEFLDRR KADSYENYYG ESETTNDLFN NFIQPKSLKR PYFPDIPANN 600 DMNAGGVDGR VKRPRSLALG ECLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-19 | 9 | 160 | 20 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010107118.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107118.1 | 0.0 | uncharacterized protein LOC21402535 isoform X2 | ||||
TrEMBL | W9SKD6 | 0.0 | W9SKD6_9ROSA; NAC domain-containing protein 1 | ||||
STRING | XP_010107118.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 3e-32 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402535 |