PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106948.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 1119aa    MW: 123148 Da    PI: 6.7603
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106948.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22139240199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_010106948.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 230
                     99*****************************9445444.48************************************************..5689 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_010106948.1 231 QHLLLGIRRA 240
                     999****997 PP
2Auxin_resp120.31.4e-39265348183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_010106948.1 265 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 348
                     79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-43128268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-40130254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-18138239No hitNo description
SMARTSM010194.5E-22139241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843139241IPR003340B3 DNA binding domain
PfamPF023621.5E-20139240IPR003340B3 DNA binding domain
PfamPF065071.5E-34265348IPR010525Auxin response factor
PfamPF023091.1E-610061092IPR033389AUX/IAA domain
PROSITE profilePS5174527.6210071091IPR000270PB1 domain
SuperFamilySSF542778.14E-710201085No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MKAPANGVGG GAASAAVAAP PNPCDGTEKK SINPELWQAC AGPLVNLPPA GTHVVYFPQG  60
HSEQVAASLK KDVDAQIPNY PNLPSKLLCL LHNVTLHADP ETDEVYAQMT LQPVPSVDKD  120
ALLRSDLALK SNKPQPEFFC KTLTASDTST HGGFSVPRRA AEKIFPSLDF SMQPPAQELV  180
ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QHLLLGIRRA  240
NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY  300
GNQISLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERR  360
NRVSIWEIEP VTAPFFICPP PFFRSKRPRQ PGMPDDESSD LDNMFKRTMP WLGDDICMKD  420
TQTFPGLSLV QWMNMQQNPG LANSIQPNYM HSFSGSVLQN LPGADLSRQL GLPTPQIPQA  480
NNLQFGSPRL PQQALPLDQL PKMSSSLSPL GSIIQPQQQL NDIAQQPRQN MVNQTLPLSQ  540
VQAQILQPQT LVQTSNILQQ QASMQSNQLQ RSLSQNQQHQ QQITSQSQQQ NVIQSQIPDQ  600
INQQLQHMSD NQLQLQLLQK LQQQQQSFLA QQSSLQQPTQ LTQIQDQQRQ LLDASQSFSR  660
SSTTSQILEM PQMVTNSLPQ SNTIAQQMTK SNISQTNTLF PHTTHQSKLQ QQQPGMLSEM  720
PGHIGLPPNP ITNQVATGGS SAVTGAVGAG QSGITDDVPS CSTSPSTNNC SNVVQPVLNS  780
RVHRSTVMPQ DMAQSATTIL SSSALETMSS SVSLVKDFSQ KSEVKPSLNI PRSQSQGIFT  840
QHTYLNGGAA AQTDYLDTSS STTSVCLSQN DMNLQQQNNN GLPFNPQQML FREASQGEEV  900
QVDQRNNVSY GNNINGPLGG APLNPDPMMT KGMVGLGKDF ANNLSSGGML GSYENSKDAQ  960
QELSSSMVSQ SFGVPDMTFN SIDSTINDSS FLNRGPWAPA PQFQRMRTYT KVYKRGAVGR  1020
SIDITRYSGY DELKQDLARR FGIEGQLEDR QRVGWKLVYV DHENDVLLVG DDPWQEFVNC  1080
VRCIKILSPQ EVQQMSLDGD FGGNGLPNQA CSSSDGGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692636945388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106948.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106948.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLW9RVN30.0W9RVN3_9ROSA; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19