PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106707.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 433aa    MW: 48537.4 Da    PI: 7.0221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106707.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32221279159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk++++prsYYrCts +C vkk+vers++d ++v++tYeg+H+h+
  XP_010106707.1 221 LDDGYRWRKYGQKAVKNNPYPRSYYRCTSGRCGVKKRVERSSDDATIVVTTYEGQHTHP 279
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-34206281IPR003657WRKY domain
SuperFamilySSF1182902.22E-28213281IPR003657WRKY domain
PROSITE profilePS5081132.053216281IPR003657WRKY domain
SMARTSM007742.0E-37221280IPR003657WRKY domain
PfamPF031065.1E-26222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDKKLEDHHH HHHQQQQQQY LHHNQSSNPM IMIPNTTNSN MIFSDDTIFN DHTMMINNMH  60
HPLICDDHMM INQKAGFMDL LGFQDHFLTS ISSSNSFLDL PSLFSSTTTT TTAPPPPPPP  120
PPQETTPSLP ESTTTCSEVL NSAATTPTTP NSDSISSSSN EDQTNINKQS VVSDHQQETT  180
TVAEQDDQEK TQKQLKPKKK NQKKQREPRF AFMTKSDVDH LDDGYRWRKY GQKAVKNNPY  240
PRSYYRCTSG RCGVKKRVER SSDDATIVVT TYEGQHTHPC PITPRGSLGI APSSEHHAGG  300
GGFISAVANS HFGVGPQLQP HHPFHHHQQL QQQQQQLQAS YNNVFSTTST PPSSSASVVN  360
PTSYPSFHVQ EIRHVNNNNN YVVSFSSNDP HHNINSSPSS ASSIRDHGLL QDIIVPSQIM  420
MRKEYKGETL NDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-252142811077Probable WRKY transcription factor 4
2lex_A1e-252142811077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106707.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-49WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLW9S5L20.0W9S5L2_9ROSA; Putative WRKY transcription factor 48
STRINGXP_010106707.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]